View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_15 (Length: 311)
Name: NF10511_low_15
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 17944542 - 17944771
Alignment:
| Q |
82 |
aagcatgtctagcggtcaaatagtggtttgtaagagtcttaatgcgacgatcctcggactcttctcatgaaccaacgctttgcaatgagaaagatccatg |
181 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17944542 |
aagcatgtctagtggtcaaatagtggtttgtaagagtcttaatgcgacgatcctcgggctcttctcatgaaccaacgctttgcaatgagaaagatccatg |
17944641 |
T |
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| Q |
182 |
gacttcgtaaattaatctccaaacaaagaatcgttgatgagtttacctcattgtaatcaatannnnnnncttaatgatatgagctgatgatttttctttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17944642 |
gacttcgtaaattaatctccaaacaaagaatcgttgatgagtttacctcattgtaatcaatatttttttcttaatgatatgagctgatgatttttctttg |
17944741 |
T |
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| Q |
282 |
gtaaaacacagagaaataaacaagaactta |
311 |
Q |
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| T |
17944742 |
gtaaaacacagagaaataaactagaactta |
17944771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 68 - 311
Target Start/End: Original strand, 19416334 - 19416578
Alignment:
| Q |
68 |
aatgagacatccacaa--gcatgtctagcggtcaaatagtggtttgtaagagtcttaatgcgacgatcctcggactcttctcatgaaccaacgctttgca |
165 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19416334 |
aatgggacatccacaaaagcatgtttagcggtcaaatagtggtttgtaagagtcttaatgcgacgatcctcggactcttctcatgaaccaacgctttgca |
19416433 |
T |
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| Q |
166 |
atgagaaagatccatggacttcgtaaattaatctccaaacaaagaatcgttgatgagtttacctcattgtaatcaatannnnnnncttaatgatatgagc |
265 |
Q |
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| T |
19416434 |
atgagaaagatccatggacttcataaattaatctccaaacaaagaatggttgatgagtttacctcattgtaatcaata-ttttttcttaatgatatgagc |
19416532 |
T |
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| Q |
266 |
tgatgatttttctttggtaaaacacagagaaataaacaagaactta |
311 |
Q |
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| T |
19416533 |
tgatgagttttctttggtaaaacacagagaaataaactagaactta |
19416578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19416207 - 19416265
Alignment:
| Q |
1 |
gaaagagataaaagcttaagaaaatgttgtattagaaacaatgagaattatacaaatga |
59 |
Q |
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| T |
19416207 |
gaaagagataaaagcttaagaaaatgttgtattagaaactatgagaatggtacaaatga |
19416265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17944392 - 17944439
Alignment:
| Q |
1 |
gaaagagataaaagcttaagaaaatgttgtattagaaacaatgagaat |
48 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
17944392 |
gaaagagataaaagcttaagaaaatgttgtattagaaactaagagaat |
17944439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 19403289 - 19403373
Alignment:
| Q |
223 |
tttacctcattgtaatcaatannnnnnncttaatgatatgagctgatgatttttctttggtaaaacacagagaaataaacaagaactt |
310 |
Q |
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| T |
19403289 |
tttacctcattgtaatcaatatttttt-cttaatgatacgagctgatgagttttctttggtaaaacac--agaaataaactagaactt |
19403373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 15232507 - 15232459
Alignment:
| Q |
2 |
aaagagataaaagcttaagaaaatgttgtattagaaacaatgagaattat |
51 |
Q |
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| T |
15232507 |
aaagagataaaagcttaag-aaatgttttattggaaacattgagaattat |
15232459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 36824461 - 36824500
Alignment:
| Q |
8 |
ataaaagcttaagaaaatgttgtattagaaacaatgagaat |
48 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||| |
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| T |
36824461 |
ataaaagcttaagaaa-tgttgtattggaaacaatgagaat |
36824500 |
T |
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