View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10511_low_16 (Length: 305)

Name: NF10511_low_16
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10511_low_16
NF10511_low_16
[»] chr2 (4 HSPs)
chr2 (8-292)||(16231305-16231589)
chr2 (187-292)||(34690143-34690248)
chr2 (187-292)||(34712555-34712660)
chr2 (106-144)||(35889737-35889775)
[»] chr1 (7 HSPs)
chr1 (187-249)||(7891867-7891929)
chr1 (187-248)||(38138776-38138837)
chr1 (187-246)||(50911744-50911803)
chr1 (187-252)||(43083147-43083212)
chr1 (187-252)||(43044303-43044368)
chr1 (187-252)||(43067623-43067688)
chr1 (187-252)||(43077500-43077565)
[»] chr6 (2 HSPs)
chr6 (187-252)||(7530171-7530236)
chr6 (187-252)||(7520634-7520699)
[»] chr4 (2 HSPs)
chr4 (193-252)||(4230774-4230833)
chr4 (185-278)||(19965413-19965506)
[»] chr8 (1 HSPs)
chr8 (187-248)||(4618992-4619053)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 16231305 - 16231589
Alignment:
Q  8 catcatcaccaataactagacctgatacattcttggatggcgtttcagcggaaactgtttcaaacagtccttcttttcttttctttgatgaagtttcagc 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16231305 catcatcgccaataactagacctgatacattcttggatggcgtttcagcagaaactgtttcaaacggtccttcttttcttttctttgatgaagtttcagc 16231404  T
Q  108 atcatctttctgatcagtcgtggaaccggtcatctttgtcgctgccttgttcttataaccattcttatttacagacattatgactccaacggccacagtt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  16231405 atcatctttctgatcagtcgtggaaccggtcatctttgtcgctgccttgttcttataaccattcttctttacagacattatgactccaacagccacagtt 16231504  T
Q  208 tgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16231505 tgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatct 16231589  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 34690143 - 34690248
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 286  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||    
T  34690143 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaa 34690242  T
Q  287 tcatct 292  Q
    ||||||    
T  34690243 tcatct 34690248  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 34712555 - 34712660
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 286  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||    
T  34712555 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaa 34712654  T
Q  287 tcatct 292  Q
    ||||||    
T  34712655 tcatct 34712660  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 35889775 - 35889737
Alignment:
Q  106 gcatcatctttctgatcagtcgtggaaccggtcatcttt 144  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  35889775 gcatcatctttctgatcagtcgtagaaccgatcatcttt 35889737  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 7891929 - 7891867
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatat 249  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7891929 atgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatat 7891867  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 38138837 - 38138776
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggata 248  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  38138837 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggata 38138776  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 50911744 - 50911803
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaagga 246  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||    
T  50911744 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaagga 50911803  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 43083147 - 43083212
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||||| || | ||||||||||    
T  43083147 atgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattca 43083212  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 43044303 - 43044368
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||| || || | ||||||||||    
T  43044303 atgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattca 43044368  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 43067688 - 43067623
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||| || || | ||||||||||    
T  43067688 atgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattca 43067623  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 43077565 - 43077500
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| ||||||||||||||| |||| |||| || |||||| ||||| | ||||||||||    
T  43077565 atgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattca 43077500  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 7530236 - 7530171
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| | ||||||||||    
T  7530236 atgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattca 7530171  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 7520699 - 7520634
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||| || ||||||||||||||||| ||||| |||||||| ||||| | ||||||||||    
T  7520699 atgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattca 7520634  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 4230774 - 4230833
Alignment:
Q  193 ccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattca 252  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||||| | ||||||||||    
T  4230774 ccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattca 4230833  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 19965506 - 19965413
Alignment:
Q  185 ttatgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggctt 278  Q
    ||||||||||||  |||||||||||||||||||||||  || ||||||  || || | |||||||| |  || | |||| ||||||||||||||    
T  19965506 ttatgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggctt 19965413  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 4618992 - 4619053
Alignment:
Q  187 atgactccaacggccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggata 248  Q
    ||||||||||| ||||| ||| |||| |||||||||||||||||||| || || ||||||||    
T  4618992 atgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggata 4619053  T

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