View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10511_low_18 (Length: 295)
Name: NF10511_low_18
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 2046655 - 2046390
Alignment:
| Q |
19 |
ataattgaatgtaattaatcagacactgaagacaccttgaatctgaagtgtcgacggtgctaaaattagaataaccaaagttcaaggagcacataannnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046655 |
ataattgaatgtaattaatcagacactgaagacaccttcaatctgaagtgtcgacggtgctaaaattagaataaccaaagttcaaggagcacataatttt |
2046556 |
T |
|
| Q |
119 |
nnnnatacacatgcatacaaacgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046555 |
ttttatacacatgcatacaaatgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatc |
2046456 |
T |
|
| Q |
219 |
tctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046455 |
tctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
2046390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 2037279 - 2037013
Alignment:
| Q |
21 |
aattgaatgtaattaatcagacactgaagacaccttgaatctgaagtgtcgacggtgctaaaa-----tta--gaataaccaaagttcaaggagcacata |
113 |
Q |
| |
|
||||||||| || |||||| |||| ||||||||||| ||||||| |||| | |||||||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
2037279 |
aattgaatgcaactaatcacacaccgaagacacctttaatctgatgtgt-gtcggtgctacaaacagattacagaataaccaaagttcaaggagcacata |
2037181 |
T |
|
| Q |
114 |
annnnnnnnatacacatgcatacaaacgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaa |
213 |
Q |
| |
|
| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2037180 |
aatttc---atacacatgcatacagatgtacaagtacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaa |
2037084 |
T |
|
| Q |
214 |
gtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2037083 |
gtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
2037013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 2054341 - 2054211
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
247 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||| | |||||||| |
|
|
| T |
2054341 |
tacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaa |
2054242 |
T |
|
| Q |
248 |
tatcataattgctattgtaaataaaagatct |
278 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |
|
|
| T |
2054241 |
tatcaacattgctattgtaaataaaggatct |
2054211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 2033094 - 2032961
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
247 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
2033094 |
tacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagctataaa |
2032995 |
T |
|
| Q |
248 |
tatcataattgctattgtaaataaaagatctatt |
281 |
Q |
| |
|
||||| |||| ||||| |||| ||| |||||||| |
|
|
| T |
2032994 |
tatcaaaattactattataaacaaaggatctatt |
2032961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 10767730 - 10767609
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
247 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||| | ||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
10767730 |
tacctgcatactacaggaatatcttctggtttgggagtatcagg---agccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaa |
10767634 |
T |
|
| Q |
248 |
tatcataattgctattgtaaataaa |
272 |
Q |
| |
|
||||| | || |||||||||||||| |
|
|
| T |
10767633 |
tatcaaagttactattgtaaataaa |
10767609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 1950438 - 1950568
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
247 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
1950438 |
tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca |
1950534 |
T |
|
| Q |
248 |
tatcataattgctattgtaaataaaagatctatt |
281 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| |||| |
|
|
| T |
1950535 |
aatcaaaattgcttttgtaaataaatgatttatt |
1950568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 2028555 - 2028429
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
247 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
2028555 |
tacctgcatacaacaggaaaatcttctggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca |
2028459 |
T |
|
| Q |
248 |
tatcataattgctattgtaaataaaagatc |
277 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| |
|
|
| T |
2028458 |
aatcaaaattgcttttgtaaataaatgatc |
2028429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 2050311 - 2050199
Alignment:
| Q |
169 |
tcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa |
268 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||| || | ||||||||||||| |||| ||||| |||| |
|
|
| T |
2050311 |
tcttctggtttgggagtatcagg---agccaagtaacacgcaaaactatccctccaattgagtgccggagagctataaatatcaaaattactattataaa |
2050215 |
T |
|
| Q |
269 |
taaaagatctattcat |
284 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
2050214 |
caaaggatctattcat |
2050199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 2057274 - 2057164
Alignment:
| Q |
169 |
tcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa |
268 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||| |||| |||||||||||||| || | ||||||||||||| |||||||||||||| |
|
|
| T |
2057274 |
tcttctggttttggagtatcagg---agccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgtaaa |
2057178 |
T |
|
| Q |
269 |
taaaagatctattc |
282 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2057177 |
caaaggatctattc |
2057164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 48908699 - 48908786
Alignment:
| Q |
148 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtg |
238 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||||||||| ||||||| ||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
48908699 |
tacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtg |
48908786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 28786155 - 28786228
Alignment:
| Q |
193 |
ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgta |
266 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||||| || ||||||| || | ||||||||||||| |
|
|
| T |
28786155 |
ggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta |
28786228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University