View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10511_low_19 (Length: 289)

Name: NF10511_low_19
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10511_low_19
NF10511_low_19
[»] chr4 (1 HSPs)
chr4 (1-289)||(35743915-35744200)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 35743915 - 35744200
Alignment:
Q  1 ggcggtggtggtggaggtgccgagggtggtaatatctgtacnnnnnnnggcattatcgtgaatggtgcaggtaggggaggagggggtgggggagaagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  35743915 ggcggtggtggtggaggtgccgagggtggtaatatctgtactttttttggcatcat---gaatggtgcaggtaggggaggagggggtgggggagaagatg 35744011  T
Q  101 aagaaatagacattgatgcttgttgcagatgagaaggtgtttgtgttggtttaggagaatttggttgaaattgtttaggagatagtggtaactccacttc 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744012 aagaaatagacattgatgcttgttgtagatgagaaggtgtttgtgttggtttaggagaatttggttgaaattgtttaggagatagtggtaactccacttc 35744111  T
Q  201 ttccataacttgatcatgtttaaccattttttgatgatgatcatcctcatttgtgtccaaatcacagacaagatcctctgatgtatcct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744112 ttccataacttgatcatgtttaaccattttttgatgatgatcatcctcatttgtgtccaaatcacagacaagatcctctgatgtatcct 35744200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University