View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10511_low_2 (Length: 612)

Name: NF10511_low_2
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10511_low_2
NF10511_low_2
[»] chr8 (1 HSPs)
chr8 (8-444)||(23627801-23628237)
[»] chr3 (7 HSPs)
chr3 (445-522)||(33691856-33691933)
chr3 (445-521)||(33283030-33283106)
chr3 (521-596)||(33284706-33284781)
chr3 (445-507)||(33287632-33287694)
chr3 (488-522)||(33287686-33287720)
chr3 (445-490)||(9843747-9843788)
chr3 (445-490)||(9854278-9854319)
[»] scaffold0054 (2 HSPs)
scaffold0054 (445-523)||(24255-24333)
scaffold0054 (492-522)||(24202-24232)
[»] scaffold0163 (4 HSPs)
scaffold0163 (445-522)||(35429-35506)
scaffold0163 (521-596)||(33713-33788)
scaffold0163 (445-507)||(30802-30864)
scaffold0163 (488-521)||(30777-30810)
[»] chr4 (7 HSPs)
chr4 (521-596)||(16659487-16659562)
chr4 (445-507)||(16656578-16656640)
chr4 (445-507)||(16661151-16661213)
chr4 (444-495)||(4750704-4750755)
chr4 (444-501)||(4743964-4744021)
chr4 (445-521)||(34948319-34948395)
chr4 (445-496)||(18381858-18381905)
[»] chr2 (2 HSPs)
chr2 (444-493)||(13116105-13116154)
chr2 (95-127)||(24462263-24462295)
[»] chr6 (4 HSPs)
chr6 (91-128)||(11079869-11079906)
chr6 (96-128)||(10968553-10968585)
chr6 (96-128)||(10982503-10982535)
chr6 (96-128)||(11019114-11019146)


Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 23628237 - 23627801
Alignment:
Q  8 cgagtgagatgaagtgggaaagggtttgtgattgaaggatgggcaccacagttggtgatactgagtcaccgtgcagtgggatcgttcttgactcattgtg 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23628237 cgagtgagaggaagtgggaaagggtttgtgattgaaggatgggcaccacagttggtgatactgagtcaccgtgcagtgggatcgtttttgactcattgtg 23628138  T
Q  108 gatggaactcggtgttggaagggttggtttgtggtgtggtgatgctgacgtggccgatgggtgcagatcagtatacgaatgcgaagctgttggtggatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23628137 gatggaactcggtgttggaagggttggtttgtggtgtggtgatgctgacgtggccgatgggtgcagatcagtatacgaatgcgaagctgttggtggatga 23628038  T
Q  208 gttgggtgttgcggttcgagttggagaagtagatgtgaaggttccggaaattgcggagtttgcggagatactgaaaggttctttgggaaggacgaaggag 307  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23628037 gttgggtgttgcggttcgagttggagaaggagatatgaaggttccggaaattgcggagtttgcggagatactgaaaggttctttgggaaggacgaaggag 23627938  T
Q  308 agggtgagagttgaagagttaagggatgctgctttgggtgctattaaggaaaatggaagttctcagaaagagttggatgggttagtgaaggagcttaatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23627937 agggtgagagttgaagagttaagggatgctgctttgggtgctattaaggaaaatggaagttctcagaaagagttggatgggttagtgaaggagcttaatg 23627838  T
Q  408 aacttatgaatgattaatttgagattttagtgtttta 444  Q
    ||||||  |||||||||||||||||||||||||||||    
T  23627837 aacttagaaatgattaatttgagattttagtgtttta 23627801  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 445 - 522
Target Start/End: Complemental strand, 33691933 - 33691856
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattg 522  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33691933 tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatattg 33691856  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 33283030 - 33283106
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatatt 521  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33283030 tattagaatatgtttatattcattgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatatt 33283106  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 521 - 596
Target Start/End: Original strand, 33284706 - 33284781
Alignment:
Q  521 tgtgaaagccagggtgatctatatcctatcaccaaccagaatatcacaaataaggccaagcatccatccacctttg 596  Q
    |||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  33284706 tgtgaaagccaatgcgatctatatcctatcaccaaccataatatcacaaataaggccaagcatccatccacatttg 33284781  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 445 - 507
Target Start/End: Original strand, 33287632 - 33287694
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattag 507  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  33287632 tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattag 33287694  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 522
Target Start/End: Original strand, 33287686 - 33287720
Alignment:
Q  488 attcattagcaattgattagtcatgaattatattg 522  Q
    |||||||||||||||||||||||||||||||||||    
T  33287686 attcattagcaattgattagtcatgaattatattg 33287720  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 490
Target Start/End: Complemental strand, 9843788 - 9843747
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatatt 490  Q
    |||||||||||||||||||||||||    |||||||||||||||||    
T  9843788 tattagaatatgtctatattcattg----tttgacttgtaaatatt 9843747  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 490
Target Start/End: Complemental strand, 9854319 - 9854278
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatatt 490  Q
    |||||||||||||||||||||||||    |||||||||||||||||    
T  9854319 tattagaatatgtctatattcattg----tttgacttgtaaatatt 9854278  T

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Target: scaffold0054 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 24333 - 24255
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattgt 523  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24333 tattagaatatgtctatattcatcgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatattgt 24255  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 522
Target Start/End: Original strand, 24202 - 24232
Alignment:
Q  492 attagcaattgattagtcatgaattatattg 522  Q
    |||||||||||||||||||||||||||||||    
T  24202 attagcaattgattagtcatgaattatattg 24232  T

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Target: scaffold0163 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 445 - 522
Target Start/End: Complemental strand, 35506 - 35429
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattg 522  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  35506 tattagaatatgtctatattcattgtatgtttgacttgtaaatattaattagcaattgtttagtcatgaattatattg 35429  T

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Target: scaffold0163; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 521 - 596
Target Start/End: Complemental strand, 33788 - 33713
Alignment:
Q  521 tgtgaaagccagggtgatctatatcctatcaccaaccagaatatcacaaataaggccaagcatccatccacctttg 596  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  33788 tgtgaaagccaaggcgatctatatcctatcaccaaccataatatcacaaataaggccaagcatccatccacatttg 33713  T

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Target: scaffold0163; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 30864 - 30802
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattag 507  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  30864 tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagtaattcattag 30802  T

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Target: scaffold0163; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Complemental strand, 30810 - 30777
Alignment:
Q  488 attcattagcaattgattagtcatgaattatatt 521  Q
    |||||||||||||| |||||||||||||||||||    
T  30810 attcattagcaattaattagtcatgaattatatt 30777  T

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Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 521 - 596
Target Start/End: Complemental strand, 16659562 - 16659487
Alignment:
Q  521 tgtgaaagccagggtgatctatatcctatcaccaaccagaatatcacaaataaggccaagcatccatccacctttg 596  Q
    |||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16659562 tgtgaaagccaaagagatctatatcctatcaccaaccaaaatatcacaaataaggccaagcatccatccacatttg 16659487  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 16656640 - 16656578
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattag 507  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  16656640 tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattag 16656578  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 16661213 - 16661151
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattag 507  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  16661213 tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattag 16661151  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 4750755 - 4750704
Alignment:
Q  444 atattagaatatgtctatattcattgtatatttgacttgtaaatattcatta 495  Q
    |||||||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  4750755 atattagaatatgtatatatttattgtatgtttgacttgaaaatattcatta 4750704  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 501
Target Start/End: Complemental strand, 4744021 - 4743964
Alignment:
Q  444 atattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaatt 501  Q
    |||||| ||||||| |||||| ||| ||| |||||||| |||||||||||||||||||    
T  4744021 atattataatatgtatatatttattatatgtttgacttataaatattcattagcaatt 4743964  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 34948319 - 34948395
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatatt 521  Q
    ||||| |||||||||||||| |||||||  || | |||||||||||||||| ||||| ||||  ||| |||||||||    
T  34948319 tattaaaatatgtctatatttattgtatgatttatttgtaaatattcattaacaattcattacccataaattatatt 34948395  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 18381858 - 18381905
Alignment:
Q  445 tattagaatatgtctatattcattgtatatttgacttgtaaatattcattag 496  Q
    |||||||||||||||||||||||||    ||||||||||||||||| |||||    
T  18381858 tattagaatatgtctatattcattg----tttgacttgtaaatattgattag 18381905  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 13116105 - 13116154
Alignment:
Q  444 atattagaatatgtctatattcattgtatatttgacttgtaaatattcat 493  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  13116105 atattataatatgtttatattcattgtatatttgacttgtaaatattcat 13116154  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 24462295 - 24462263
Alignment:
Q  95 ttgactcattgtggatggaactcggtgttggaa 127  Q
    ||||||||||||||||||||||| |||||||||    
T  24462295 ttgactcattgtggatggaactcagtgttggaa 24462263  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 11079869 - 11079906
Alignment:
Q  91 gttcttgactcattgtggatggaactcggtgttggaag 128  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  11079869 gttcgtgactcattgtggatggaactccgtgttggaag 11079906  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 10968553 - 10968585
Alignment:
Q  96 tgactcattgtggatggaactcggtgttggaag 128  Q
    |||| ||||||||||||||||||||||||||||    
T  10968553 tgacacattgtggatggaactcggtgttggaag 10968585  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 10982503 - 10982535
Alignment:
Q  96 tgactcattgtggatggaactcggtgttggaag 128  Q
    |||| ||||||||||||||||||||||||||||    
T  10982503 tgacacattgtggatggaactcggtgttggaag 10982535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 11019114 - 11019146
Alignment:
Q  96 tgactcattgtggatggaactcggtgttggaag 128  Q
    |||||||||||||||||||||| ||||||||||    
T  11019114 tgactcattgtggatggaactccgtgttggaag 11019146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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