View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_20 (Length: 283)
Name: NF10511_low_20
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 45868308 - 45868562
Alignment:
| Q |
14 |
taaaattgattatttatttatttgtttgtttttgtgaaagggtgttgattgcattcgacaaaaggttcaatctgttttggatcaaaagctcactgtttgg |
113 |
Q |
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| T |
45868308 |
taaaattgattatttatttatttgtttgtttttgtgaaagggtgttgattgcattcgacaaaaggttcaatctgttttggatcaaaagctcactgtttgg |
45868407 |
T |
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| Q |
114 |
gaaaaatactgtctttatcactgtttttctcttccccaaggctttcaattaccaaacactctcaatgtatgttctgctccaacttgttgttattcactaa |
213 |
Q |
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| T |
45868408 |
gaaaaatactgtctttatcactgtttttctcttccccaaggctttcaattaccaaacactctcaatgtatgttctgctccaacttgttgttattcactaa |
45868507 |
T |
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| Q |
214 |
ttatggtcaatgtggcctcaatcacagtccattgcagtcacatagacatcaaaat |
268 |
Q |
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| T |
45868508 |
ttatggtcaatgtggcctcaatcacagtccattgcagtcacagagacatcaaaat |
45868562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 45982697 - 45982443
Alignment:
| Q |
14 |
taaaattgattatttatttatttgtttgtttttgtgaaagggtgttgattgcattcgacaaaaggttcaatctgttttggatcaaaagctcactgtttgg |
113 |
Q |
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| T |
45982697 |
taaaattgattatttatttatttgtttgtttttgtgaaagggtgttgattgcattcgacaaaaggttcaatctgttttggatcaaaagctcactgtttgg |
45982598 |
T |
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| Q |
114 |
gaaaaatactgtctttatcactgtttttctcttccccaaggctttcaattaccaaacactctcaatgtatgttctgctccaacttgttgttattcactaa |
213 |
Q |
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| T |
45982597 |
gaaaaatactgtctttatcactgtttttctcttccccaaggctttcaattaccaaacactctcaatgtatgttctgctccaacttgttgttattcactaa |
45982498 |
T |
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| Q |
214 |
ttatggtcaatgtggcctcaatcacagtccattgcagtcacatagacatcaaaat |
268 |
Q |
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| T |
45982497 |
ttatggtcaatgtggcctcaatcacagtccattgcagtcacagagacatcaaaat |
45982443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 40893035 - 40893171
Alignment:
| Q |
27 |
ttatttatttgtttgtttttgtgaaagggtgttgattgcattcgacaaaaggttcaatctgttttggatcaaaagctcactgtttgggaaaaatactgtc |
126 |
Q |
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| T |
40893035 |
ttatttatttacttgattttgtgaaagggtgttgattgcattcgtcaaaag----------ttttggatcaaaagctcgctgtttggggaaaatactctc |
40893124 |
T |
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| Q |
127 |
tttatcactgtttttctcttccccaaggctttcaattaccaaacact |
173 |
Q |
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| T |
40893125 |
ttcatcactgtttttctcttcctcgaggttttcatttgccaaacact |
40893171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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