View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_21 (Length: 273)
Name: NF10511_low_21
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 50738902 - 50739158
Alignment:
| Q |
17 |
aagttctgtaaaagctagagcaatattctaattttgtaggttaagtgggagtttgttaaacagaaaattcagtttcacacaattctttggaagttatatg |
116 |
Q |
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| T |
50738902 |
aagttctgtaaaagctagagaaatattctaattttgtaggctaagtgggagtttgttaaacagaaaattcagtttcacacaattctttggaagttatatg |
50739001 |
T |
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| Q |
117 |
ttcaagagttgatccacagcacaacatgttcactgccctcgtaacgcagtaccaaacctgcgctaagacaaatttggtggagggaatactattttgcttc |
216 |
Q |
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| T |
50739002 |
ttcaagagttgatccacagcacaacatgttcactgccctcgtaacgcagtaccaaacctgcgctaagacaaatttggtggagggaatactattttgcttc |
50739101 |
T |
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| Q |
217 |
taaagcaaagcacgttcagttttcacaattttatgcaaccgttgattttcaaagttc |
273 |
Q |
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| T |
50739102 |
taaagcaaagcacgttcagttttcacaattttatgcaaccattgattttcaaagttc |
50739158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 3417732 - 3417928
Alignment:
| Q |
35 |
agcaatattctaattttgtaggttaagtgggagtttgttaaacagaaaattcagtttcacacaattctttggaagttatatgttcaagagttgatccaca |
134 |
Q |
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||||||||| || || |||||| ||||| || ||||||| |||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
3417732 |
agcaatattatatttgtgtaggctaagtaggtgtttgttgaacataaaactcagtttcgtacaattctttggaagttatgtgttcaagagttgatccaca |
3417831 |
T |
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| Q |
135 |
gcacaacatgttcactgccctcgtaacgcagtaccaaacctgcgctaagacaaatttggtggagggaatactattttgcttctaaagcaaagcacgt |
231 |
Q |
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| T |
3417832 |
tcacaacatgatcactgccctcataacgcggtaccaaaactgcgttgagacaaatttggtccagggactactattttgctgctaaagcaaagcacgt |
3417928 |
T |
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