View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_27 (Length: 259)
Name: NF10511_low_27
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 52528931 - 52528864
Alignment:
| Q |
174 |
ttctctattgtcattttttccccttctcaatttcccaacccacctttccttcccatctactctctctg |
241 |
Q |
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| T |
52528931 |
ttctctattgtcattttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg |
52528864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 26720573 - 26720645
Alignment:
| Q |
170 |
atccttctctattgtcatttt-ttccccttctcaatttcccaacccacctttccttcccatctactctctctg |
241 |
Q |
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| T |
26720573 |
atccttctttgttgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactttctctg |
26720645 |
T |
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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 52529147 - 52529105
Alignment:
| Q |
1 |
cataaccctaatcctaaataattggctccaaaaatttgaaatt |
43 |
Q |
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| T |
52529147 |
cataaccctaaacctaaaaaattgactccaaaaatttgaaatt |
52529105 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 45118316 - 45118251
Alignment:
| Q |
170 |
atccttctctattgtca-ttttttccccttctcaatttcccaacccacctttccttcccatctact |
234 |
Q |
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| T |
45118316 |
atccttctctattgtcacttttttccccttctcaatttcccaatccacgtttccttcccatctact |
45118251 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 39076263 - 39076227
Alignment:
| Q |
4 |
aaccctaatcctaaataattggctccaaaaatttgaa |
40 |
Q |
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| T |
39076263 |
aaccctaatcctaaaaaaatggctccaaaaatttgaa |
39076227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 45118508 - 45118420
Alignment:
| Q |
22 |
ttggctccaaaaatttgaaatttgaat-ccaccttttcgttatgagctcgccaattcccaatggtatattacactgtctcctaacattg |
109 |
Q |
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| T |
45118508 |
ttggctccaaatatttgaaatttaaatcccacattttcattatgagcttgcgtattcccaatgatgcattccactatcttctaacattg |
45118420 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 13863628 - 13863560
Alignment:
| Q |
174 |
ttctctattgtcatttttt-ccccttctcaatttcccaacccacctttccttcccatctactctctctg |
241 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
13863628 |
ttctcaattgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg |
13863560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13863843 - 13863801
Alignment:
| Q |
1 |
cataaccctaatcctaaataattggctccaaaaatttgaaatt |
43 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
13863843 |
cataaccctaaacctaaaaaattggctccaaaaatttgaaatt |
13863801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 2985721 - 2985786
Alignment:
| Q |
170 |
atccttctctattgtca-ttttttccccttctcaatttcccaacccacctttccttcccatctact |
234 |
Q |
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| T |
2985721 |
atccttctctattgtcacttttttccccttctcaatttcccaatccatgtttccttcccatctact |
2985786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 2985527 - 2985615
Alignment:
| Q |
22 |
ttggctccaaaaatttgaaatttgaat-ccaccttttcgttatgagctcgccaattcccaatggtatattacactgtctcctaacattg |
109 |
Q |
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||||||||||| ||||||||||| ||| |||| ||||| ||||||||| || |||||||||| | ||| |||| ||| ||||||||| |
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| T |
2985527 |
ttggctccaaatatttgaaatttaaatcccacattttcattatgagcttgcgtattcccaatgatgcattccactatcttctaacattg |
2985615 |
T |
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