View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_28 (Length: 257)
Name: NF10511_low_28
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 33882609 - 33882446
Alignment:
| Q |
17 |
cagagacactaagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccg |
116 |
Q |
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| T |
33882609 |
cagagacactaagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccgacccaacaataaaaccaggtggtttaggaggccg |
33882510 |
T |
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| Q |
117 |
acaaatattctctaat------tcaatcctttcattcctcacaagaatacttcgaatttcagca |
174 |
Q |
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| T |
33882509 |
acaaatattctctaattcaaattcaatcctttcagtcctcacaagaacacttcgaatttcagca |
33882446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 33866739 - 33866523
Alignment:
| Q |
44 |
tcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattctct-aattcaatccttt |
142 |
Q |
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| T |
33866739 |
tcaacaatctcatcttcaactcattcaaaggaccatccaacccaacaataaaaccaggtggttgaggtggcaaacaaacac-ctcttaattcaactcttt |
33866641 |
T |
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| Q |
143 |
cattcctcacaagaata--ctt-cgaatttcagcacgaaactctttaatctccaaatgtgtttccaatccaatcactgcaccttgagctatcatatcaag |
239 |
Q |
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| T |
33866640 |
cacttctcccaacattagccttactaaattcagcacgaaactctttaatctccaaaagtgtttccaatccagtcactgcaccttgagctatcatatcaag |
33866541 |
T |
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| Q |
240 |
accaaagaatcttttaat |
257 |
Q |
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| T |
33866540 |
accaaagaatcttttaat |
33866523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 33882404 - 33882342
Alignment:
| Q |
195 |
atgtgtttccaatccaatcactgcaccttgagctatcatatcaagaccaaagaatcttttaat |
257 |
Q |
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| T |
33882404 |
atgtgtttccaatccagtccttgcaatttgagctatcaaatcaagatcaaagaatcttttaat |
33882342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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