View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_3 (Length: 576)
Name: NF10511_low_3
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 100 - 442
Target Start/End: Complemental strand, 47426457 - 47426089
Alignment:
| Q |
100 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtggcaatgctatacttg-------------------aatatgttaggaatgatgattta |
180 |
Q |
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| T |
47426457 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtagcaatgctatatttgttaagaataatgatacgtgaatatgttaggaatgat---tta |
47426361 |
T |
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| Q |
181 |
tatgaagaggtgaggagaaattagtagaggatggagatcgaaagggaggatnnnnnnnttaatgatggtgttaatgtggaggttacggtggaatataatg |
280 |
Q |
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| T |
47426360 |
tatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtgttaatgtggaggttacggtggaatataatg |
47426261 |
T |
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| Q |
281 |
acaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat-----------caaatttacacgcctaaaat |
369 |
Q |
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| T |
47426260 |
acaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaattaaaaacaagacaaatttacacgcctaaaat |
47426161 |
T |
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| Q |
370 |
gattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtttaa |
442 |
Q |
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| T |
47426160 |
gattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtttaa |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 454 - 565
Target Start/End: Complemental strand, 47426007 - 47425896
Alignment:
| Q |
454 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
553 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
554 |
caactaattcat |
565 |
Q |
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| T |
47425907 |
caactaattcat |
47425896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 47426572 - 47426487
Alignment:
| Q |
18 |
agctatgcggttactactagtgatgattcctattattactcgtgaattcttgaatggtacaaagtaagcaaagattcaatattgaa |
103 |
Q |
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| T |
47426572 |
agctatgcggttactactagtgatgattcctattattactcgtgaattcttgaatggtacaaagtaagcaaagattcaatattgaa |
47426487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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