View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10511_low_30 (Length: 257)
Name: NF10511_low_30
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19666287 - 19666047
Alignment:
| Q |
1 |
tcaaccaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
19666287 |
tcaaccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagcgcttccatcgacgaattccaaccac |
19666188 |
T |
|
| Q |
101 |
aatgtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
19666187 |
aatgtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggactccaattcaccacttttcctctctcatttgtttcctctaagaactc |
19666088 |
T |
|
| Q |
201 |
atttggtagaacatgttcctttcgacccgattccttagaag |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19666087 |
atttggtagaacatgttcctttcgacccgattccttagaag |
19666047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 11546638 - 11546852
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||| ||||||| |
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|
| T |
11546638 |
accaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaacacctaaactaagtgcctctattgaagaattccaaccacaat |
11546737 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatt |
203 |
Q |
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|
|||||||||||||| | | |||||||||||| | ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
11546738 |
gtgttatgaaacataccaatgaaggatgagccaatacttcttcttgtggactccatttcacaacttttcctctctcatttgtttcctctaagaacccatt |
11546837 |
T |
|
| Q |
204 |
tggtagaacatgttc |
218 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
11546838 |
tggcaaaacatgttc |
11546852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 48618928 - 48618730
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| ||||||| |
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|
| T |
48618928 |
accaagaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaagaaagtgcttccattgatgaattccaaccacaat |
48618829 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
202 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || || ||||||||||||||| |
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|
| T |
48618828 |
gtgttatgaagcatgccactgaaggatgagcaagtacttcttcttgtggactccagttcaccacttttcctctctcacttattccctctaagaacccat |
48618730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 48652527 - 48652725
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| ||||||| |
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|
| T |
48652527 |
accaagaattttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaagaaagtgcttccattgatgaattccaaccacaat |
48652626 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
202 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||| || || ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48652627 |
gtgttatgaagcatgccactgaaggatgagcaagtacttgttcttgtggactccattttacaacttttcctctctcacttgtttcctctaagaacccat |
48652725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 48660977 - 48661175
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||| |||||||| ||||| | ||| || || |||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| |
|
|
| T |
48660977 |
accaagaactttgcgtttgtaagttggtcaccaaatgcaggaaatgtcaacattggaactcctaaagtaattgcttccatcgatgaattccaaccacaat |
48661076 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
202 |
Q |
| |
|
| |||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| ||||| |||||||||||| || |||||||||| ||||| |||| |
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|
| T |
48661077 |
gggttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccat |
48661175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 48666566 - 48666767
Alignment:
| Q |
1 |
tcaaccaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccac |
100 |
Q |
| |
|
|||||||| |||||||| ||||| | ||| || || ||| |||||||||||||||||||||||||||| ||||||||||||| || || ||||| |||| |
|
|
| T |
48666566 |
tcaaccaagaactttgcgtttgtaagttggtcaccaaatgttggaaatgtcaacattggaactcctaaagtaagtgcttccattgatgagttccaaccac |
48666665 |
T |
|
| Q |
101 |
aatgtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaaccc |
200 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | ||||| ||||||||||| ||||||||| |||||||||||| || |||||||||| ||||| || |
|
|
| T |
48666666 |
aatgtgttatgaaacatgccactgatggatgagccaatacttgttcttgtggactccaattcactacttttcctctcccacttgtttcctccaagaatcc |
48666765 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
48666766 |
at |
48666767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 48584749 - 48584939
Alignment:
| Q |
1 |
tcaaccaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccac |
100 |
Q |
| |
|
|||||||| || ||||||||||| | ||| || || | || |||||||||||||| |||||||||||| ||| ||||| || || |||||||| |||| |
|
|
| T |
48584749 |
tcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaagaaagagcttcaattgatgaattccaaccac |
48584848 |
T |
|
| Q |
101 |
aatgtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctc |
191 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
48584849 |
aatgtgttatgaaacatgcaactgaaggatgagcaagtacatctacttgtggactccactccaccactttccctctctcatttgtttcctc |
48584939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 48628334 - 48628530
Alignment:
| Q |
6 |
caaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatgt |
105 |
Q |
| |
|
|||||||||||||||||| | || || || |||||||||||| ||||| |||||||||| || || ||||||||||| |||||||| ||||||||| |
|
|
| T |
48628334 |
caaaaactttgcatttgtaaggtggtcaccaaatgctggaaatgccaacactggaactcctgaagcaattgcttccatcgttgaattccagccacaatgt |
48628433 |
T |
|
| Q |
106 |
gttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
202 |
Q |
| |
|
|| | ||||||||| || ||||||||| |||||||||| |||||||||| ||| |||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
48628434 |
gtcacgaaacatgccaccgaaggatgatcaagtacttcctcttgtggactccacttcaccacttttcctcactcacttgtttcctccaagaacccat |
48628530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 48655999 - 48656186
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||| |||||||||||||| ||| || || || |||||||||| |||| |||||||||| || ||||| ||| |||| |||||||| ||||||| |
|
|
| T |
48655999 |
accaagaactttgcatttgtaggttggtcaccaaatactggaaatgttaacactggaactcctgaagcaagtgattcaatcgttgaattccaaccacaat |
48656098 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctc |
191 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||| || |||||||||| |
|
|
| T |
48656099 |
gggttatgaaacatgccactgaaggatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctc |
48656186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 27223371 - 27223566
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
27223371 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgttaacatcggcactcctaaagtaagtgcttccatcgacgagttccaaccacaat |
27223470 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacc |
199 |
Q |
| |
|
|||||| || ||||| || ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| || | |||||||| ||||||| |
|
|
| T |
27223471 |
gtgttacaaagcatgccaccgaaggatgagctagtacttgttcttgtggacaccacttcaccacttttcctctcccactagtttcctcgaagaacc |
27223566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 27227562 - 27227760
Alignment:
| Q |
4 |
accaaaaactttgcatttgtgacttgatcgccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaat |
103 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
27227562 |
accaagaactttgcatttgtaacttgatcaccccatgctggaaatgttaacatcggcactcctaaagtaagtgcctccatcgacgagttccaaccacaat |
27227661 |
T |
|
| Q |
104 |
gtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
202 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||| | ||||||||| || || | |||||||| |||||||||| |
|
|
| T |
27227662 |
gtgtcatgaaacatgccactgaaggatgagctagtacttgttcttgtggacaccacttcgcaacttttcctttcccactagtttcctccaagaacccat |
27227760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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