View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_33 (Length: 242)
Name: NF10511_low_33
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 52411200 - 52410970
Alignment:
| Q |
1 |
cacataattggcaacttcttctcttggcttgtgatcgatttattgataattcaatactactttttattcttccatgttgagtctctcttgtcacatcctt |
100 |
Q |
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| T |
52411200 |
cacataattggcaacttcttctcttggcttgtgatcgatttattgataattcaatactactttttattcttccatgttgagtctctcttgtcacatcctt |
52411101 |
T |
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| Q |
101 |
ttttcttcctttagtttgtgaaccacgtggatctttaatatctaattcaacagatacgttcaatggctcactcgtcaaattttcagaacttggctctaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52411100 |
ttttcttcctttagtttgtgaaccacgtggatctttaatatctaattcaacagatacgttcaatggctcactcgtcaaattttcagaacttggctctaaa |
52411001 |
T |
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| Q |
201 |
ggagttatgccatcttcaatgcgcagttcat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
52411000 |
ggagttatgccatcttcaatgcgcagttcat |
52410970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7774515 - 7774745
Alignment:
| Q |
1 |
cacataattggcaacttcttctcttggcttgtgatcgatttattgataattcaatactactttttattcttccatgttgagtctctcttgtcacatcctt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
7774515 |
cacataattggcaacttctcctcttggcttgtgatcgagttattgatagttcaatactacttttgattcttccatgttgagtctctcttgttacatcctt |
7774614 |
T |
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| Q |
101 |
ttttcttcctttagtttgtgaaccacgtggatctttaatatctaattcaacagatacgttcaatggctcactcgtcaaattttcagaacttggctctaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
7774615 |
ttttcttcctttagtttgtgaaccacgtggatctttaatatctaattcaacagatacgttcaatggctcattcatcaaatttttagaacttggctctaga |
7774714 |
T |
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| Q |
201 |
ggagttatgccatcttcaatgcgcagttcat |
231 |
Q |
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||||||||| ||||||||||||||| ||||| |
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| T |
7774715 |
ggagttatgtcatcttcaatgcgcatttcat |
7774745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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