View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_36 (Length: 229)
Name: NF10511_low_36
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_36 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 124462 - 124369
Alignment:
| Q |
1 |
cttacagtacgatcctattcttatgttatttagataatatcattgtggtttaataacaaactgatcataaaaattctatatatgtacaggggaa |
94 |
Q |
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| T |
124462 |
cttacagtacgatcctattcttatgttatttagataatatcattgtggtttaataacaatctgatcataaaaattctatatatgtacaggggaa |
124369 |
T |
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Target: scaffold0028; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 124364 - 124304
Alignment:
| Q |
163 |
caggctggaccaactatcattcttctgcacaatgctaagattaaggaagccacaggttatc |
223 |
Q |
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| T |
124364 |
caggctggaccaactatcattcttctgcacaatgctaagattaagaaagccacaggttatc |
124304 |
T |
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 22079173 - 22079119
Alignment:
| Q |
168 |
tggaccaactatcattcttctgcacaatgctaagattaaggaagccacaggttat |
222 |
Q |
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| T |
22079173 |
tggaccaactatcattcttcttcacaatgctaagattaaggaagccacatgttat |
22079119 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 23699539 - 23699478
Alignment:
| Q |
82 |
atgtacaggggaacattattcagttgtacactgtggaaagactttggtatccaattcctaaa |
143 |
Q |
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| T |
23699539 |
atgtacaggggaacattattaaactgtacactgtgggaagactatggtcttcaattcctaaa |
23699478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 23699463 - 23699408
Alignment:
| Q |
167 |
ctggaccaactatcattcttctgcacaatgctaagattaaggaagccacaggttat |
222 |
Q |
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| T |
23699463 |
ctggaccaattgtcattcttcttcacaattctaaaattaaggaagccacaagttat |
23699408 |
T |
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