View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10511_low_38 (Length: 227)

Name: NF10511_low_38
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10511_low_38
NF10511_low_38
[»] chr3 (8 HSPs)
chr3 (1-209)||(33396900-33397108)
chr3 (2-86)||(36875961-36876045)
chr3 (2-85)||(33708643-33708726)
chr3 (2-169)||(33714400-33714561)
chr3 (2-89)||(27005388-27005475)
chr3 (2-183)||(36810550-36810725)
chr3 (129-169)||(33708565-33708605)
chr3 (126-182)||(33093465-33093521)
[»] chr7 (1 HSPs)
chr7 (126-187)||(18723868-18723929)
[»] chr4 (1 HSPs)
chr4 (49-77)||(55908347-55908375)
[»] chr2 (1 HSPs)
chr2 (49-77)||(1037283-1037311)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33396900 - 33397108
Alignment:
Q  1 ttaaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaagtccatgaaacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33396900 ttaaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaagtccatgaaacttt 33396999  T
Q  101 gaacattcaaatattttgactcaaaattttgaagatctagatgctgcagagatcgacaccttgacaagaggtaagagatcccagtatttgtatgtccgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33397000 gaacattcaaatattttgactcaaaattttgaagatctagatgctgcagagatcgacaccttgacaagaggtaagagatcccagcatttgtatgtccgaa 33397099  T
Q  201 gcatttgcg 209  Q
    |||||||||    
T  33397100 gcatttgcg 33397108  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 36875961 - 36876045
Alignment:
Q  2 taaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaa 86  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  36875961 taagaagtgcaaagaaggctgcattggtgagcttgtcacaaccattgacgtttatagacaccaaatcgccaagaaatgcacacaa 36876045  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 33708726 - 33708643
Alignment:
Q  2 taaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacaca 85  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||| | |  ||||||||||| ||||||||||||||| ||||||    
T  33708726 taaggagtgcaaagaaggctgaattggtgagcttgtcacaaccactcacatttatagacactaaatcaccaagaaatgcacaca 33708643  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 33714561 - 33714400
Alignment:
Q  2 taaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaagtccatgaaactttg 101  Q
    ||||||||||||| ||||||| |||| |||| | |||||||||| | |  ||||||||||| ||||||||||||||| ||||||  ||  |||||   ||    
T  33714561 taaggagtgcaaagaaggctgaattggtgaggtcgtcacaaccactcacatttatagacactaaatcaccaagaaatgcacacagctcattgaaatgctg 33714462  T
Q  102 aacattcaaatattttgactcaaaattttgaagatctagatgctgcagagatcgacaccttgacaaga 169  Q
    | |||||||| | |||| | ||     ||||||||||||||||||||||||||||||  |||||||||    
T  33714461 atcattcaaaaactttg-caca-----ttgaagatctagatgctgcagagatcgacaatttgacaaga 33714400  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 27005475 - 27005388
Alignment:
Q  2 taaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaagtc 89  Q
    ||||||||||||| |||||||  ||| |||||| || ||||||  ||||||||||||||||||||||| ||||| | ||| |||||||    
T  27005475 taaggagtgcaaagaaggctgagttggtgagctggtgacaaccgctgaggtttatagacaccaaatcagcaagataaacagacaagtc 27005388  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 36810725 - 36810550
Alignment:
Q  2 taaggagtgcaaataaggctgcattgttgagcttgtcacaaccattgaggtttatagacaccaaatcaccaagaaatacacacaagtccatgaaactttg 101  Q
    ||||||||||||| |||| || || | |||||| || ||||||  ||| ||||||||||||||||||| ||||| ||||| |||| ||  ||| ||  ||    
T  36810725 taaggagtgcaaagaaggatgaataggtgagctggtaacaaccgctgacgtttatagacaccaaatcagcaagatatacagacaactcattgatacgctg 36810626  T
Q  102 aacattcaaatattttgactcaaaattttgaagatctagatgctgcagagatcgacaccttgacaagaggtaagagatccca 183  Q
    | |||||||| | ||||       || ||||||||||||| |||| ||| |||||||| ||||||  || ||||||||||||    
T  36810625 atcattcaaaaactttg------catcttgaagatctagaagctgtagaaatcgacactttgacagtagataagagatccca 36810550  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33708605 - 33708565
Alignment:
Q  129 ttgaagatctagatgctgcagagatcgacaccttgacaaga 169  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  33708605 ttgaatatctagatgctgcagagatcgacactttgacaaga 33708565  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 33093521 - 33093465
Alignment:
Q  126 attttgaagatctagatgctgcagagatcgacaccttgacaagaggtaagagatccc 182  Q
    ||||||||||| ||||||||||| | ||| |||| |||||||||  |||||||||||    
T  33093521 attttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatccc 33093465  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 18723929 - 18723868
Alignment:
Q  126 attttgaagatctagatgctgcagagatcgacaccttgacaagaggtaagagatcccagtat 187  Q
    ||||| |||||||||||| |||||| |||||||| |||||||||| ||||||||||| ||||    
T  18723929 attttaaagatctagatgttgcagaaatcgacactttgacaagagataagagatcccggtat 18723868  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 55908375 - 55908347
Alignment:
Q  49 aggtttatagacaccaaatcaccaagaaa 77  Q
    |||||||||||||||||||||||||||||    
T  55908375 aggtttatagacaccaaatcaccaagaaa 55908347  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 1037311 - 1037283
Alignment:
Q  49 aggtttatagacaccaaatcaccaagaaa 77  Q
    |||||||||||||||||||||||||||||    
T  1037311 aggtttatagacaccaaatcaccaagaaa 1037283  T

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