View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10511_low_40 (Length: 219)
Name: NF10511_low_40
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 33882292 - 33882095
Alignment:
| Q |
2 |
caacaattccaccactggattttgtcttcattagaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcgtttcattaggtg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33882292 |
caacaattccaccactggattttgtcttcattagaacattttagaacaagttcttttccatctttcatttgtttgattattctctttgtttcattaggtg |
33882193 |
T |
|
| Q |
102 |
atcggtccaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttggtttgaacttc |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33882192 |
atcggttcaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttctaagcgttctagagttggtttgaacttc |
33882095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 33866474 - 33866276
Alignment:
| Q |
1 |
acaacaattccaccactggattttgtcttcattagaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcgtttcattaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | | || |||||||| ||| |
|
|
| T |
33866474 |
acaacaattccaccactggattttgtcttcattagaacattttagaacaagttcttttccatctttcatttgtttgatcagtgtttttgtttcattgggt |
33866375 |
T |
|
| Q |
101 |
gatcggtccaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttggtttgaacttc |
199 |
Q |
| |
|
|| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| || || ||| ||| | ||||||||||||||||||||| |
|
|
| T |
33866374 |
gaatgatccaatttcttcttgagttcatctatttgattgatcaatggtcctaatgattgaagtgtagcttctaatctatctagagttggtttgaacttc |
33866276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University