View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_5 (Length: 491)
Name: NF10511_low_5
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 3801080 - 3800657
Alignment:
| Q |
15 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtttgaaagaaatatattcaaacaa---acataattttccat |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
3801080 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtt-gaaagaaatatattcaaacaacaaacataattttccat |
3800982 |
T |
|
| Q |
112 |
tcttcgtcttctctgtcatcgatggatcaccaccgatctgatctgatcttttaaattaagtccatattttgcaaatgaattttgtaatttcgcagcatag |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800981 |
tcttcatcttctctgtcatcgatggatcaccaccgatctgatctgatcttttaaattaagtccatattttgcaaatgaattttgtaatttcgcagcatag |
3800882 |
T |
|
| Q |
212 |
gtaattaaagaatgttgatgtaatttcattaaaaaagagatgttagtgttgtaaatcacacagttgagaaataggtttcacagatctctgagtcatgttc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3800881 |
gtaattaaagaatgttgatgtaatttcattaaaaaagagatgtcagtgttgtaaatcacacagttgagaaataagtttcacagatctctgagtcatgttc |
3800782 |
T |
|
| Q |
312 |
aagaaggaagagaagaatgaattaaagaaggaattaaatgggtttaacgcatagttttgtgaatttcatattcaagaaagaacagaagggattggaacaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
3800781 |
aagaaggaagagaagaatgaattaaagaaggaattaaatgggtttcatgcatagttttgtgaatttcatattgaagaaggaagagaagggattggaacaa |
3800682 |
T |
|
| Q |
412 |
ttaagattgaatgggaacaaaccct |
436 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
3800681 |
ttaaggttgaatgggaacaaaccct |
3800657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 3800655 - 3800624
Alignment:
| Q |
451 |
ttgtcgtaaaggagatgaagttattttcttct |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3800655 |
ttgtcgtaaaggagatgaagttattttcttct |
3800624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 165 - 482
Target Start/End: Complemental strand, 3990338 - 3990048
Alignment:
| Q |
165 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaattaaagaatgttgatgtaatttcattaaaaaagagatgttagtgttgta |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
3990338 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaat--------------gtaatttcattaaaaa-gagatgttagtgttgta |
3990254 |
T |
|
| Q |
265 |
aatcacacagttgagaaataggtttcacagatctctgagtcatgttcaagaaggaagagaagaatgaattaaagaaggaattaaatgggtttaacgcata |
364 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
3990253 |
aatcacacaattgagaaataggtttcacagatctctgagtcatgttgaagaaggaagagaagaatgaattaaa------------tggatttcacgcata |
3990166 |
T |
|
| Q |
365 |
gttttgtgaatttcatattcaagaaagaacagaagggattggaacaattaagattgaatgggaacaaacccttatgagtttgtgatttgtcgtaaaggag |
464 |
Q |
| |
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|||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
3990165 |
gttttgtgaatttcatatcgaagaatgaagagaagggattggaacaatttaggttgaatgggaacaaactcttctgagtttgtgatttgtcgtaaaggag |
3990066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 3990528 - 3990385
Alignment:
| Q |
15 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtttgaaagaaatatattca---aacaaacataattttccat |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
3990528 |
cttctctccaacaggtaaataagaaactgaacaaagccattgaaaagccatcttcattg-ttgaaagacatatattcaaacaacaaacataattttccat |
3990430 |
T |
|
| Q |
112 |
tcttcgtcttctctgtcatcgatgga-tcaccaccgatctgatct |
155 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
3990429 |
tcttcgtcctctctgtcatccatggattcaccaccgatctgatct |
3990385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 260 - 482
Target Start/End: Original strand, 25066650 - 25066860
Alignment:
| Q |
260 |
ttgtaaatcacacagttgagaaataggtttcacagatctctgagtcatgttcaagaaggaagagaagaatgaattaaagaaggaattaaatgggtttaac |
359 |
Q |
| |
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|||||||||||||| ||||||||| ||||||| |||| ||||||||||||| |||||||||||||||| |||||||| || ||||| || |
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| T |
25066650 |
ttgtaaatcacacaattgagaaatgggtttcatagatttctgagtcatgttgaagaaggaagagaaga------------aggaattatattggtttcac |
25066737 |
T |
|
| Q |
360 |
gcatagttttgtgaatttcatattcaagaaagaacagaagggattggaacaattaagattgaatgggaacaaacccttatgagtttgtgatttgtcgtaa |
459 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||| || || |||| ||||||||||| ||||||||||||| |||||| |
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| T |
25066738 |
gcatagttttgtgaatttcagattgaagaaggaagagaaaggattggaacaatttaggttaaatgacaacaaacccttccgagtttgtgatttctcgtaa |
25066837 |
T |
|
| Q |
460 |
aggagatgaagttattttcttct |
482 |
Q |
| |
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|||| ||||| |||||||||||| |
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| T |
25066838 |
aggatatgaaattattttcttct |
25066860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 39716991 - 39716937
Alignment:
| Q |
165 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaattaa |
219 |
Q |
| |
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|||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
39716991 |
aatttagtccatattttgcgaatgaattttgtaaatttgcagcataggtaattaa |
39716937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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