View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_7 (Length: 453)
Name: NF10511_low_7
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_7 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 712824 - 713214
Alignment:
| Q |
13 |
catcaaagaaaactatattaaaaaatgttacatgaattgcatgcttgaagattgtaaaagtctattgagagtcaaaaaactagaattgcatgcttttcat |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
712824 |
catccaagaaaactatattaaaaaatgttacatgaattgcatgcttgaagattgtaaaagtctattgagagtcaaaaaactagaattgcatgcttttcat |
712923 |
T |
|
| Q |
113 |
tgcaactctagtaaatcaataatcttaacaacagtcatctcaaaataccactgttcaaacacgaataaattataatattcttgtttttgtatgtaaaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
712924 |
tgcaactctagtaaatcaataatcttaacaacagtcatctcaaaataccactgttcaaacacaaataaattataatattcttgtttttgtatgtaaaatg |
713023 |
T |
|
| Q |
213 |
atatggtaggtttcccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtcnnnnnnncatccacttgctaaataagccttcctcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
713024 |
atatggtaggtttcccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtctttttttcatccacttgctaaataagccttcctcat |
713123 |
T |
|
| Q |
313 |
ataatacctacaaagctacaatataggttacaaacctactatgtatatgaatattttatgtcaaaagaggtagtatttagacacaagattt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713124 |
ataatacctacaaagctacaatataggttacaaacctaccatgtatatgaatattttatgtcaaaagaggtagtatttagacacaagattt |
713214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 752044 - 752134
Alignment:
| Q |
13 |
catcaaagaaaactatattaaaaaatgttacatgaattgcatgcttgaagattgtaaaagtctattgagagtcaaaaaactagaattgcat |
103 |
Q |
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| T |
752044 |
catccaagaaaactatattaaaaaatgttacatgaattgcatgcttgaagattgtaaaagtctattgagagtcaaaaaactagaattgcat |
752134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 21369818 - 21369748
Alignment:
| Q |
284 |
catccacttgctaaataagccttcctcatataatacctacaaagctacaatataggttacaaacctactat |
354 |
Q |
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|||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
21369818 |
catccacttgctaaataatccttcccagtataatacctacagagctactatataggttacaaacctactat |
21369748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 126 - 403
Target Start/End: Original strand, 3762735 - 3763012
Alignment:
| Q |
126 |
aatcaataatcttaacaacagtcatctcaaaataccactgttcaaacacgaataaattataatattcttgtttttgtatgtaaaatgatatggtaggttt |
225 |
Q |
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||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||| || |
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| T |
3762735 |
aatcaataatcttaacaacagccatctcaataatccactgttcaaacgtgaataaattataatatccttgtttttgtattttaaatgatatggtaggctt |
3762834 |
T |
|
| Q |
226 |
cccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtcnnnnnnncatccacttgctaaataagccttcctcatataatacctacaa |
325 |
Q |
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|||||||||| |||| || ||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
3762835 |
cccgcattggacattctttaaattaattaacatccacttgtaatgattgtctttttttcatccacttgctgaataagtcttccccatataatacctacaa |
3762934 |
T |
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| Q |
326 |
agctacaatataggttacaaacctactatgtatatgaatattttatgtcaaaagaggtagtatttagacacaagattt |
403 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
3762935 |
agctacaatgtaggttacaaacctactatggatatgaatattttatgtcaaaacaggtagtatttaaacacaagattt |
3763012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 126 - 355
Target Start/End: Original strand, 36118897 - 36119131
Alignment:
| Q |
126 |
aatcaataatcttaacaacagtcatctcaaaataccactgttcaaacacgaataaattataatattcttgtttttgtatgtaaaatgatatggtaggttt |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
36118897 |
aatcaataatcttaacaacagtcatgtcaaaataccactgttcaaacacgaataaattataatatctttgtttttgtatgtaaaatgatatggtaggctt |
36118996 |
T |
|
| Q |
226 |
cccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtc--nnnnnnncatccacttgctaaataagccttcctcatataatacctac |
323 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36118997 |
cccgcattgggcatttttcaaattaatcaacatccacttgcaatggttgtctttttttttcatccacttgctaaataagccttcctcatataatacctac |
36119096 |
T |
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| Q |
324 |
aaagctacaata---taggttacaaacctactatg |
355 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
36119097 |
aaagctacaatatagtaggttacaaacctactatg |
36119131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 127 - 355
Target Start/End: Original strand, 40564493 - 40564728
Alignment:
| Q |
127 |
atcaataatcttaacaacagtcatctcaaaataccactgttcaaacacgaataaattataatat----tctt-gtttttgtatgtaaaatgatatggtag |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
40564493 |
atcaataatcttaacaacagtcatctcaaaagaccactgttcaaacacgaataaattataatataatatctttgtttttgtatgtaaaatgatatggtag |
40564592 |
T |
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| Q |
222 |
gtttcccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtc-nnnnnnncatccac-ttgctaaataagccttcctcatataatac |
319 |
Q |
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| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
40564593 |
gcttcccgcattgggcatttttcaaattaatcaacatccacttgcaatggttgtcttttttttcatccactttgctaaataagccttcctcatataatac |
40564692 |
T |
|
| Q |
320 |
ctacaaagctacaatataggttacaaacctactatg |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40564693 |
ctacaaagctacaatataggttacaaacctactatg |
40564728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 19042 - 19112
Alignment:
| Q |
284 |
catccacttgctaaataagccttcctcatataatacctacaaagctacaatataggttacaaacctactat |
354 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
19042 |
catccacttgctaaataatccttcccagtataatacctacagagctactatataggttacaaacctactat |
19112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 126 - 338
Target Start/End: Complemental strand, 24213925 - 24213717
Alignment:
| Q |
126 |
aatcaataatcttaacaacagtcatctcaaaataccactgttcaaacacgaataaattataatattcttgtttttgtatgtaaaatgatatggtaggttt |
225 |
Q |
| |
|
||||||||||||||| ||| | | |||||||| ||| |||||||| || |||||| ||||||| | ||||||||||| |||||||||||| || || |
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|
| T |
24213925 |
aatcaataatcttaatcacaatgttatcaaaatatcaccgttcaaacgcggataaat-ataatatcttcctttttgtatgttaaatgatatggttggctt |
24213827 |
T |
|
| Q |
226 |
cccgcattgggcatttttcaaattaattaacatccacttgcaatggttgtc-nnnnnnncatccacttgctaaataagccttcctcatataatacctaca |
324 |
Q |
| |
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|| || ||||||||||| | ||||||||| |||||| |||||||||| ||| |||||||||||||| |||| | ||||||| | ||||| |
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|
| T |
24213826 |
ccagcgttgggcatttt----ctaaattaacattcacttgtaatggttgtctttttctgcattcacttgctaaataatcctttcccatataacaactaca |
24213731 |
T |
|
| Q |
325 |
aagctacaatatag |
338 |
Q |
| |
|
|||||||||||||| |
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|
| T |
24213730 |
aagctacaatatag |
24213717 |
T |
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