View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_8 (Length: 450)
Name: NF10511_low_8
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 31597356 - 31596939
Alignment:
| Q |
15 |
gagactcagagttgcaagagatgattactggagtaatatatgtgccttgagtgacaatcataagaatagcacattcaacaacactttctttcaacgttat |
114 |
Q |
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| T |
31597356 |
gagacttagagttgcaagagatgattactggagtaatatatgtgccttgagtgacaatcataagaacagcacattcaacaacactttctttcaacgttat |
31597257 |
T |
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| Q |
115 |
ggtaatacttcgtctaaagtaactttgttatacaattacaatacaagtttaccgaggagtgttgttgagattccgattttggacacccaagctgcgaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31597256 |
ggtaatacttcgtctaaagtaactttgttatacaattacaatacaagtttaccgaggagtgttgttgagattccgattttggacacccaagctgcgaaaa |
31597157 |
T |
|
| Q |
215 |
ttgcaacggttaatgatgtaaaccaagcattagaaaagggttttgagttgaaatggacgggaaattataatgagtgtcagaagtgtgttgattccggtgg |
314 |
Q |
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| T |
31597156 |
ttgcaacggttaatgatgtaaaccaagcattagaaaagggttttgagttgaaatggacgggaaattatagtgagtgtcagaagtgtgttgattccggtgg |
31597057 |
T |
|
| Q |
315 |
agtgtgtggcaacgatggaggaattggatttaaatgtttctgtaagaatggaacttctaccactacatgcagttcaccattgcccttatcctcaagtatg |
414 |
Q |
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| T |
31597056 |
agtgtgtggcaacgatggaggaattggattcaaatgtttctgtaagaatggaacttctaccactacatgcagttcaccattgcccttatcctcaagtatg |
31596957 |
T |
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| Q |
415 |
taaatattatcactttct |
432 |
Q |
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| T |
31596956 |
taaatattatcactttct |
31596939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 356
Target Start/End: Complemental strand, 31606264 - 31606117
Alignment:
| Q |
212 |
aaattgcaacggttaatgatgtaaaccaagcattagaaaagggttttgagttgaaatggacgggaaattataatgagtgtcagaagtgtgttgattccgg |
311 |
Q |
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||||||||||| | |||||| ||||| |||||||| || |||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| | |
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| T |
31606264 |
aaattgcaacgctcaatgatataaacaaagcattacaaggcggttttgatttgaaatggacgggaaattatggagagtgtcaaaagtgcgttgattctga |
31606165 |
T |
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| Q |
312 |
tggagtgtgtg---gcaacgatggaggaattggatttaaatgtttctg |
356 |
Q |
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| T |
31606164 |
tggtgtgtgtggcagcaatgatggaggaaatgaatttagatgtttctg |
31606117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 31616169 - 31616038
Alignment:
| Q |
226 |
aatgatgtaaaccaagcattagaaaagggttttgagttgaaatggacgggaaattataatgagtgtcagaagtgtgttgattccggtggagtgtgtg--- |
322 |
Q |
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|||||| |||||||||||||| || | || ||||| ||||||||||||||||||||| |||||||| |||||||||||||| | ||| || |||| |
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| T |
31616169 |
aatgatataaaccaagcattacaagacggctttgatttgaaatggacgggaaattat--ggagtgtcaaaagtgtgttgattctgatggtgtatgtggca |
31616072 |
T |
|
| Q |
323 |
gcaacgatggaggaattggatttaaatgtttctg |
356 |
Q |
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| T |
31616071 |
gcaatgatggaggaaatgaatttagatgtttctg |
31616038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 31610053 - 31609923
Alignment:
| Q |
235 |
aaccaagcattagaaaagggttttgagttgaaatggacgggaaattataatgagtgtcagaagtgtgttgattccggtggagtgtgtggcaacgatggag |
334 |
Q |
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|||||||||||| |||| ||||||||||||| |||||| || |||||| |||||||||| ||| ||||||| ||||| || ||||| || ||||||| |
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| T |
31610053 |
aaccaagcattaaaaaacggttttgagttgagatggacaggcaattatggagagtgtcagaggtgcattgattctggtggtgtttgtgggaatgatggag |
31609954 |
T |
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| Q |
335 |
gaattggatttaaatgtttctgtaagaatgg |
365 |
Q |
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||| | ||| | ||||||||||||| |||| |
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| T |
31609953 |
gaactcaattcagatgtttctgtaaggatgg |
31609923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 31610385 - 31610348
Alignment:
| Q |
11 |
cacagagactcagagttgcaagagatgattactggagt |
48 |
Q |
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| T |
31610385 |
cacagagactcagagttgccagagacgattactggagt |
31610348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 52170912 - 52171025
Alignment:
| Q |
253 |
ggttttgagttgaaatggacgggaaattataatgagtgtcagaagtgtgttgattccggtggagtgtgtggcaacgatggaggaattggatttaaatgtt |
352 |
Q |
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|||||||| ||||||||||| ||| ||||| |||||||| | |||||||| ||| ||||| | ||||| || |||||||||| || ||| |||||| |
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| T |
52170912 |
ggttttgatttgaaatggacaggagattatggagagtgtcaaaggtgtgttgtttctggtggtgcatgtgggaatgatggaggaagtgaattccaatgtt |
52171011 |
T |
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| Q |
353 |
tctgtaagaatgga |
366 |
Q |
| |
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|||||||| ||||| |
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| T |
52171012 |
tctgtaaggatgga |
52171025 |
T |
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