View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_9 (Length: 414)
Name: NF10511_low_9
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 400
Target Start/End: Original strand, 3000338 - 3000712
Alignment:
| Q |
22 |
tggtagattcatatgttgattaaggtgatcaagataaattgaacaagaggaggacgggagagattcggtatgaatgagaccagaatttacgcttgccttt |
121 |
Q |
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| T |
3000338 |
tggtagattcagatgttgattaaggtgatcaagataaattgaacaagaggaggacgagagagattcggtatgaatgagaccggaatttatgcttgccttt |
3000437 |
T |
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| Q |
122 |
gatgtatatatgtagctaatatgtatgagagttaggttaatgaagttaatattaggcttgcttcgttgaatggtattcgcgataagtttatcggtgttgc |
221 |
Q |
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| T |
3000438 |
gatgtat----gtagctaatatgtatgagagtttggttaatgaagttaatattaggcttgcttcgttgaatggtattcacgataagtttatcggtgttgc |
3000533 |
T |
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| Q |
222 |
tcttgaagctgcgattggattgcatagaagactcgcgaagaaatttcctaaaaaaggtccttttatatacaatttagatttaatttcatttgcttgtagc |
321 |
Q |
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| T |
3000534 |
tcttgaagctgcgattggattgcatagaagacttgcgaagaaatttcctaaaaaaggtccttttatattcaatttagatttaatttcatttgcttgtagc |
3000633 |
T |
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| Q |
322 |
tatgtagtgttggaagtggaatttttgtgctatgtatataatgttttattgcttagggtcatatgatatattggttgtg |
400 |
Q |
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| T |
3000634 |
tatatagtgttggaagtggaatttttgtgctatgtatataatgttttattgcttagggtcatatgatgtattggttgtg |
3000712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 14895823 - 14895679
Alignment:
| Q |
22 |
tggtagattcatatgttgattaaggtgatcaagataaattgaacaagaggaggacgggagagattcggtatgaatgagaccagaatttacgcttgccttt |
121 |
Q |
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| T |
14895823 |
tggtagattccaatgttgattaaggtgatcaagataaattgaacaagaggaagacgagagagattcagtatgaaggagaccccaatttcgccttgccttt |
14895724 |
T |
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| Q |
122 |
gatgtatatatgtagctaatatgtatgagagttaggttaatgaagttaa |
170 |
Q |
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| T |
14895723 |
gatg----tatgtagctaatatgtatgagagtttggttaatgaagttaa |
14895679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 14895527 - 14895416
Alignment:
| Q |
183 |
ttcgttgaatggtattcgcgataagtttatcggtgttgctcttgaagctgcgattggattgcatagaagactcgcgaagaaatttcctaaaaaaggtcct |
282 |
Q |
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| T |
14895527 |
ttcgttgaatggtattcgtgataagtctatcagtgttgctcttaaagctgcaggtggtttgcatagagggctcatgaagaattttcctaaaaaaggtcct |
14895428 |
T |
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| Q |
283 |
tttatatacaat |
294 |
Q |
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| T |
14895427 |
tttatattcaat |
14895416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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