View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10512_high_1 (Length: 248)
Name: NF10512_high_1
Description: NF10512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10512_high_1 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 752035 - 752275
Alignment:
| Q |
1 |
aaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaac |
100 |
Q |
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| T |
752035 |
aaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcccgcaaaacaac |
752134 |
T |
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| Q |
101 |
atgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctc |
200 |
Q |
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| T |
752135 |
atgtctcaagcacacatttatccaccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctc |
752234 |
T |
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| Q |
201 |
atatggtttcaactgcacaaagctctcaaccttctcctatg |
241 |
Q |
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| T |
752235 |
atatggtttcaactgcacaaagctctcaaccttctcctatg |
752275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 7327338 - 7327174
Alignment:
| Q |
61 |
ctcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttaggg |
160 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||| | ||||| | ||| ||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
7327338 |
ctcaaagccaagtagctacttcaatctcatgcaaaacaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattaggg |
7327239 |
T |
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| Q |
161 |
ttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
225 |
Q |
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| T |
7327238 |
ttttggcaacttcaactcggacaaagctctcaaccttcttctatgatttccaatgcgcaaagctc |
7327174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 746137 - 746329
Alignment:
| Q |
33 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgat |
132 |
Q |
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| T |
746137 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttactctccattgat |
746236 |
T |
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| Q |
133 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
225 |
Q |
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| T |
746237 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaagctc |
746329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 51792488 - 51792294
Alignment:
| Q |
1 |
aaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaac |
100 |
Q |
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| T |
51792488 |
aaaaacaatagctcatgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatgcaaaattcc |
51792389 |
T |
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| Q |
101 |
atgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaacc |
195 |
Q |
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| T |
51792388 |
atgtctcaagcacaaacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctcaacc |
51792294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2396 - 2262
Alignment:
| Q |
1 |
aaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaac |
100 |
Q |
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|||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| || ||||| ||| |
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| T |
2396 |
aaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aac |
2300 |
T |
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| Q |
101 |
atgtctcaagcacacatttatcctccattgatgaatat |
138 |
Q |
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| T |
2299 |
atgtctcaagcagaaatttaacctccattgattaatat |
2262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 7907 - 7773
Alignment:
| Q |
1 |
aaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaac |
100 |
Q |
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|||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| || ||||| ||| |
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| T |
7907 |
aaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aac |
7811 |
T |
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| Q |
101 |
atgtctcaagcacacatttatcctccattgatgaatat |
138 |
Q |
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| T |
7810 |
atgtctcaagcagaaatttaacctccattgattaatat |
7773 |
T |
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