View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10512_low_2 (Length: 364)
Name: NF10512_low_2
Description: NF10512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10512_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 14508811 - 14508473
Alignment:
| Q |
18 |
atcatgatgtaaatgatgatgtatacagtaatagaaagacatggcccaagagatgatgttagcatgcaatacatgaaatggtcacaacattttcaattgc |
117 |
Q |
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| T |
14508811 |
atcatgatgtaaatgatgatgtatacagtaatagaaagacatggcccaagagatgatgttagcatgcaatacatgaaatggtcacaacattttcaattgc |
14508712 |
T |
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| Q |
118 |
catgtttcatgcccttttaggatttaattgtgttttagttttgaacatgaaaagttggtcatgacacttaaactcattagacaaaatcattgtttagcat |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14508711 |
catgtttcatgcctttttaggatttaattgtgttttagttttgaacatgaaaagttggtcatgacacttaaactcattagacaaaatcattgtttagcat |
14508612 |
T |
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| Q |
218 |
cactgtttcacccttgcaaaaccttaatatattcctaattggcctcttttgatttaccttttggcgtttaaaccttataatatacaccaacatgtagaga |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14508611 |
cactatttcacccttgcaaaaccttaatatattcctaattggcctcttttgatttaccttttggcgtttaaaccttataatatacaccaacatgtagaga |
14508512 |
T |
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| Q |
318 |
tagattcatcatttaaattctagcacctaccttcttctc |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
14508511 |
tagattcatcatttaaattctagcacctaccttcttctc |
14508473 |
T |
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