View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10512_low_3 (Length: 323)
Name: NF10512_low_3
Description: NF10512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10512_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 31980595 - 31980901
Alignment:
| Q |
1 |
cagcagccttcgcctctcaacgctccttcttctcctcccccggtagctctaactcattaattgaatatacaaacacaaattgcattcaacattcttcggt |
100 |
Q |
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| T |
31980595 |
cagcagccttcgcctctcaacgcttcttcttctcctcccccggtagctctaactcattaattgaatatacaaacacagattgcattcaacattcttcggt |
31980694 |
T |
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| Q |
101 |
accaccgatggataagtccaatagtactgagcgtgagaagaaacaagagaaagagaaagaggaggttttgttaaacggaagtgtggcagtaccaacctac |
200 |
Q |
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| T |
31980695 |
accactgatggataagtccaatagtactaagcgtgagaagaaacaagagaaagagaaagaggaggttttgttcaatggaagtgtggcagtaccaacctac |
31980794 |
T |
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| Q |
201 |
tcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatggatgtgaaatcaaattggaacatcctgcatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31980795 |
tcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatggatgtgaaatcaaattggaacatcttgcatg |
31980894 |
T |
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| Q |
301 |
agttgct |
307 |
Q |
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||||||| |
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| T |
31980895 |
agttgct |
31980901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 38042478 - 38042383
Alignment:
| Q |
174 |
aacggaagtgtggcagtaccaacctactcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatg |
269 |
Q |
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|||||||||||||| || ||||| || || || || ||||| ||||||||| |||| || ||||||||||||||||| |||| ||| ||||||||| |
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| T |
38042478 |
aacggaagtgtggcggtgccaacatattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatg |
38042383 |
T |
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