View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10512_low_4 (Length: 288)
Name: NF10512_low_4
Description: NF10512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10512_low_4 |
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| [»] scaffold0061 (2 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 751866 - 751596
Alignment:
| Q |
1 |
aattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751866 |
aattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattcttt |
751767 |
T |
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| Q |
101 |
gcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaag |
200 |
Q |
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| T |
751766 |
gcaactcttttgtgtctttaggccatgtttcaggttcatcatacccttggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaag |
751667 |
T |
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| Q |
201 |
aatggaaagttcctcaacttttgtcattaaaccaatctttcttgtttgcaatgatatctttctagatttct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751666 |
aatggaaagttcctcaacttttgtcattaaaccaatctttcttgtttgcaatgatatctttctagatttct |
751596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 745963 - 745697
Alignment:
| Q |
1 |
aattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattcttt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||||||| ||||||||| ||||| |
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| T |
745963 |
aattcaacttttttcatcctttccttaaaatattcttgaacatcataggtcttaggacgcctatcaattgttgtctcatagtacttttgaagaactcttt |
745864 |
T |
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| Q |
101 |
gcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaag |
200 |
Q |
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| T |
745863 |
gtacctctcttttgtctttaggccatgtttcaggttcaatatatccttggccttcaaggttaggagcgtacaagatcaaacaaacatcaacatcacaaag |
745764 |
T |
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| Q |
201 |
aatggaaagttcctcaacttttgtcattaaaccaatctttcttgtttgcaatgatatctttctagat |
267 |
Q |
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|||||||| ||||| |||| | ||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
745763 |
aatggaaaattcctttgctttctttattaaaccatcctttctcttttgcaatgttatctttctagat |
745697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 7327575 - 7327837
Alignment:
| Q |
9 |
ttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcacatct |
108 |
Q |
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||||||||||||||| |||||||| |||||||||| |||| ||||| ||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| ||| |
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| T |
7327575 |
ttttttcatcctttccttaaaatactcttgaacatcatagatcttaggacgcctgtcacttgttgtattatagtacttttgaaggattctttgcacctct |
7327674 |
T |
|
| Q |
109 |
tttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaa |
208 |
Q |
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| T |
7327675 |
cttttgtctttaggccatgtttcaggttcaacgaatccttgggcttcaaagttaggagcatagagaattacacaaacatcaacatcacaaagaatggaaa |
7327774 |
T |
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| Q |
209 |
gttcctcaacttttgtcattaaaccaatctttcttgtttgcaatgatatctttctagatttct |
271 |
Q |
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| T |
7327775 |
attcattcacttttttcattaatccattctttctcttctgaaatgttgtctttcttgatttct |
7327837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 51792657 - 51792886
Alignment:
| Q |
1 |
aattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattcttt |
100 |
Q |
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||||||| |||| | || ||||| |||||||| |||||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
51792657 |
aattcaagttttctaattctttccttaaaatactcttgaacatcatagatcttaggacgcctatcacttgttgtgttatagtacttttgaaggattcttt |
51792756 |
T |
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| Q |
101 |
gcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaag |
200 |
Q |
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|| || || |||| ||||||||||||||||||||| || | || | ||| |||| ||||||||||| |||| |||||| |||||||||||||||| |
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| T |
51792757 |
ctaccgctcttttgtccttaggccatgtttcaggttcagcaaatcctcgacctacaaaattgggagcatagagaactacacaaacatcaacatcacaaag |
51792856 |
T |
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| Q |
201 |
aatggaaagttcctcaacttttgtcattaa |
230 |
Q |
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| T |
51792857 |
aatggaaaattcattcacttttttcattaa |
51792886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 2628 - 2752
Alignment:
| Q |
106 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatgg |
205 |
Q |
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|||||||||||||| |||||| |||||||| | || | || || |||||||| ||||||||||| |||| |||||| ||||||||| ||||||||| | |
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| T |
2628 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcatagagaactacacaaacatcaacattacaaagaatag |
2727 |
T |
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| Q |
206 |
aaagttcctcaacttttgtcattaa |
230 |
Q |
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||| ||| | |||||| ||||||| |
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| T |
2728 |
aaaattcattcacttttttcattaa |
2752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 8139 - 8263
Alignment:
| Q |
106 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatgg |
205 |
Q |
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|||||||||||||| |||||| |||||||| | || | || || |||||||| ||||||||||| |||| |||||| ||||||||| ||||||||| | |
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| T |
8139 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcatagagaactacacaaacatcaacattacaaagaatag |
8238 |
T |
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| Q |
206 |
aaagttcctcaacttttgtcattaa |
230 |
Q |
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||| ||| | |||||| ||||||| |
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| T |
8239 |
aaaattcattcacttttttcattaa |
8263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 129638 - 129732
Alignment:
| Q |
106 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaa |
202 |
Q |
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|||||||||||||| |||||| |||||||| | || | || || |||||||| |||||||||| |||| |||||| |||||||||||||||||| |
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| T |
129638 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcat--agaactacacaaacatcaacatcacaaagaa |
129732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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