View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10513_low_11 (Length: 265)
Name: NF10513_low_11
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 27958133 - 27957963
Alignment:
| Q |
16 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccattactacactct |
115 |
Q |
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| T |
27958133 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccatta--acacact |
27958036 |
T |
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| Q |
116 |
cttgcaaaata-tttttcacacttcacttttatttttgttgcttctgtatgaatgttgatggtcacacacaca |
187 |
Q |
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| T |
27958035 |
cttgcaaaatattttttcacacttcacttttatttttgttgcttctgtatgaatgttgatggtcacacacaca |
27957963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 27983950 - 27983784
Alignment:
| Q |
16 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccattactacactct |
115 |
Q |
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| T |
27983950 |
taaccatcttcaagaagtctcttgataatccatgaaccaataaacccagtacctccagttacacaaactcttcctttccctttttccatcaccacactct |
27983851 |
T |
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| Q |
116 |
cttgcaaaatat-ttttcacacttcacttttatttttgttgcttctgtatgaatgttgatggtcaca |
181 |
Q |
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| T |
27983850 |
cttgcaaaatatattttcacacttcacttttatttttgttgcttctgtatgaatgttgaaggtcaca |
27983784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 28002095 - 28001931
Alignment:
| Q |
16 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccattactacactct |
115 |
Q |
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| T |
28002095 |
taaccatcttcaagaagtctcttaataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttcccttcttccatta--acacact |
28001998 |
T |
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| Q |
116 |
cttgcaaaata-tttttcacacttcacttttatttttgttgcttctgtatgaatgttgatggtcaca |
181 |
Q |
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| T |
28001997 |
cctgcaaaatattttttcacacttcacttttatttttgttcgttctgtatgaatgttgattgtcaca |
28001931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 28011820 - 28011705
Alignment:
| Q |
16 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccattactacactct |
115 |
Q |
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| T |
28011820 |
taaccatcttcaaggagtctcttaataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttcccttcttccattactacactct |
28011721 |
T |
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| Q |
116 |
cttgcaaaatattttt |
131 |
Q |
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| T |
28011720 |
cttgcaaaatattttt |
28011705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 27991535 - 27991363
Alignment:
| Q |
16 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccattacta------ |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
27991535 |
taaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttccttttccctcttccattactagcttac |
27991436 |
T |
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| Q |
110 |
--cactc-tcttgcaaaatatttttcacacttcacttttatttttgttgcttctgtatgaatgttgatggtcaca |
181 |
Q |
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| T |
27991435 |
ctcactcttcttgc-aaata-tttccacacttcacttttacttttgttagttttgtatgaaggttgatggtcaca |
27991363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 27943637 - 27943558
Alignment:
| Q |
19 |
ccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttcccttc |
98 |
Q |
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| T |
27943637 |
ccattttcaagaagactcttgataatccatgaaccaagaaaacctgtacctccagtcacacaaactcttccttttccttc |
27943558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 27957945 - 27957901
Alignment:
| Q |
211 |
acacgcatgcatgcatctaaatttcttggttgttgcttttctgtg |
255 |
Q |
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| T |
27957945 |
acacgcatgcatgcatctaaagttcttggttgttacttttctgtg |
27957901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 27998317 - 27998280
Alignment:
| Q |
78 |
acaaactcttcctttcccttcttccattactacactct |
115 |
Q |
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| T |
27998317 |
acaaactcttcctttcccttcttccattatcacactct |
27998280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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