View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10513_low_18 (Length: 242)
Name: NF10513_low_18
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 46677136 - 46676919
Alignment:
| Q |
15 |
tcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattataccttagttttt |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46677136 |
tcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattataccttagttttt |
46677037 |
T |
|
| Q |
115 |
aactttcttcattagcctaacaccaaagtttgtaactggggaaggagggtcatgcataaactgcaactgtaagaaatcaaagtgtatgaaaatgtaagtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46677036 |
aactttcttcattagcctaacaccaaagtttgtaactggggaaggagggtcatgcagaaactgcaactgtaagaaatcaaagtgtatgaaactgtaagtt |
46676937 |
T |
|
| Q |
215 |
ctaaagcatgctcctttg |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46676936 |
ctaaagcatgctcctttg |
46676919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 46703686 - 46703563
Alignment:
| Q |
15 |
tcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattataccttagttttt |
114 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| || || ||||||||| | ||| |||||| ||||||||||||||| | ||||||||| |
|
|
| T |
46703686 |
tcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattattat------atgttagttttt |
46703593 |
T |
|
| Q |
115 |
aactttcttcattagcctaacaccaaagtt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46703592 |
aactttcttcattagcctaacaccaaagtt |
46703563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 46685662 - 46685544
Alignment:
| Q |
15 |
tcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattataccttagttttt |
114 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
46685662 |
tcagagtatcccacaaaggaaaaggaaagt--agtttttgattgtcgattccactgcttgataatctttattccatta------ttatatgttagttttt |
46685571 |
T |
|
| Q |
115 |
aactttcttcattagcctaacaccaaa |
141 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
46685570 |
aactttcttcattaacctaacaccaaa |
46685544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 46680566 - 46680486
Alignment:
| Q |
151 |
tggggaaggagggtcatgcataaactgcaactgtaagaaatcaaagtgtatgaaaatgtaagttctaaagcatgctccttt |
231 |
Q |
| |
|
|||||||| |||| |||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||| || |||||||| |
|
|
| T |
46680566 |
tggggaagaagggacatgcaaaaactgccactgtaagaaattggagtgtttgaaactgtaagttctaaaacacgctccttt |
46680486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 21728248 - 21728211
Alignment:
| Q |
106 |
ttagtttttaactttcttcattagcctaacaccaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21728248 |
ttagtttttaactttcttcattggcctaacaccgaagt |
21728211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University