View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10513_low_2 (Length: 457)
Name: NF10513_low_2
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 48209560 - 48209947
Alignment:
| Q |
1 |
attattaaagaatttaggactcaaatttaagttaaaatcaaagttgcacattaaacttataacatgctaagtatgctattgagctgcaatgtggtacgta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48209560 |
attattaaagaattaaggactcaaatttaagttaaaatcaaagttgcacattaaacttataacatgctaagtatgctattgagctgcaatgttgtacgta |
48209659 |
T |
|
| Q |
101 |
gagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattacgtaaccattagctagctagatcaaagctctccttccttaacacag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48209660 |
gagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattacgtaaccattagctagctagatcaaagctcttcttccttaacacag |
48209759 |
T |
|
| Q |
201 |
aagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcctctgatacttctcaataaattgaagataattcctcctatcaataataatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48209760 |
aagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcctctgatacttctcaataaattgaagataattcctcctatcaataataatcc |
48209859 |
T |
|
| Q |
301 |
tgttcatcttatcactgagacaagttccagaatcggttcctgttttaaatataacaataaaaggatatcaattagaagcaaaaataaa |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48209860 |
tgttcatcttatcactgagacaagttccagaatcggttcctgttttaaatataacaataaaaggatatcaattagaaacaaaaataaa |
48209947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 48217870 - 48217788
Alignment:
| Q |
248 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcactgagacaagttccag |
330 |
Q |
| |
|
||||||||| |||| || || |||||||||||||||||| ||| |||| |||| ||||||||| ||||| |||||||||||| |
|
|
| T |
48217870 |
cctctgatatttcttgatgaagtgaagataattcctcctaacaacaatagtcctattcatcttagcactgtgacaagttccag |
48217788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 48205260 - 48205376
Alignment:
| Q |
71 |
gtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattac--gtaa---ccatta |
165 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||| |||| ||||||| || ||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
48205260 |
gtatgctattgaactgcaatgttgtacaaagagattcacatag-ccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccatta |
48205358 |
T |
|
| Q |
166 |
gctagctagatcaaagct |
183 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
48205359 |
gctagctggatcaaagct |
48205376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 32586813 - 32586881
Alignment:
| Q |
248 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcact |
316 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||| ||| |||| |
|
|
| T |
32586813 |
cctctgatacttcttaataaagtgaagataattcctcctgacaataatagtcctattcattttagcact |
32586881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 32586647 - 32586710
Alignment:
| Q |
183 |
tctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcat |
246 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||| |||| |||| |
|
|
| T |
32586647 |
tctccttccttgacacggaagcaaggtgatacatgagctggaatgtttgaatgcctcttctcat |
32586710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University