View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10513_low_23 (Length: 219)
Name: NF10513_low_23
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15169424 - 15169225
Alignment:
| Q |
1 |
attcatcacactagtgactatcaaaatcagttatccttcaatgaattctacacatttaattgaagagcaatcaaaggatggacaagaagaaaaccaacaa |
100 |
Q |
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| T |
15169424 |
attcatcacactagtgactatcaaaatcagttctccttcaatgaattctacacatttaattgaagagcaatcaaaggatggacaagaagaaaaccaacaa |
15169325 |
T |
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| Q |
101 |
gacaataagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169324 |
gacaataagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatcc |
15169225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 15172206 - 15172046
Alignment:
| Q |
40 |
aatgaattctacacatttaattgaagagcaatcaaaggatggacaagaagaaaaccaacaagacaataagcaggtgatcctctcacttcctaaagaaaat |
139 |
Q |
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|||| |||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15172206 |
aatggattctacacatttaatgggagagcaatcaaaggatggacaagaagcaagccaacaagacaacaagcaggtgatcctctcacttcctaaagaaaat |
15172107 |
T |
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| Q |
140 |
gcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatcc |
200 |
Q |
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| T |
15172106 |
gcatggatattgtcccaaaatgtatattttcaatgtttttggtgtccatcaaatatgatcc |
15172046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 15076372 - 15076450
Alignment:
| Q |
122 |
tcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatcc |
200 |
Q |
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||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
15076372 |
tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatattttcaatgtttttggtgtccatcaaatatgatcc |
15076450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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