View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10513_low_25 (Length: 214)
Name: NF10513_low_25
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 6900453 - 6900273
Alignment:
| Q |
20 |
tatcaaaagaaattcagtcctttcaatgctataattcaaaataacaatttcaaatattgaactaacgcagatcaattagcatagttgtgttgtaaaaatg |
119 |
Q |
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| T |
6900453 |
tatcaaaagaaattcagtcctttcaatgctataattcaaaataacaatttcaaatatagaactaacgcagatcaattagcatagttgtgttgtaaaaatg |
6900354 |
T |
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| Q |
120 |
caaaaagacgtagttatttacccaagcgtcttctggtcttccttgctggttgattgaaccatgtcttgacatagttttgcc |
200 |
Q |
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| T |
6900353 |
caaaaagacgtagttatttacccaaacgtcttctggtcttccttgctggttgattgaaccatgtcttgacatagttttgcc |
6900273 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 45808355 - 45808293
Alignment:
| Q |
138 |
tacccaagcgtcttctggtcttccttgctggttgattgaaccatgtcttgacatagttttgcc |
200 |
Q |
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|||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
45808355 |
tacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttgacatagttttgcc |
45808293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 11046360 - 11046423
Alignment:
| Q |
137 |
ttacccaagcgtcttctggtcttccttgctggttgattgaaccatgtcttgacatagttttgcc |
200 |
Q |
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||||| ||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||||||| |
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| T |
11046360 |
ttacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttaacatagttttgcc |
11046423 |
T |
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