View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10513_low_4 (Length: 374)
Name: NF10513_low_4
Description: NF10513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10513_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 25788775 - 25788879
Alignment:
| Q |
5 |
atttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattccaataaacttgttggaaaaattcctactttcacgaaatatgc |
104 |
Q |
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| T |
25788775 |
atttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattccaataaacttgttggaaaaattcctactttcatgaaatatgc |
25788874 |
T |
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| Q |
105 |
tgtcc |
109 |
Q |
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| T |
25788875 |
tgtcc |
25788879 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 25788892 - 25788965
Alignment:
| Q |
290 |
tattcccaagtgtttgacaaaaaggaatagtacactcagagtactaaatcttgctggaaacaagctcacaggtt |
363 |
Q |
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|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788892 |
tatttccaagtgtttaataaaaaggaatagtacactcagagtactaaatcttgctggaaacaagctcacaggtt |
25788965 |
T |
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