View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10514_high_1 (Length: 392)
Name: NF10514_high_1
Description: NF10514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10514_high_1 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 14544417 - 14544714
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14544417 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct |
14544516 |
T |
|
| Q |
178 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14544517 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatc |
14544616 |
T |
|
| Q |
278 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14544617 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
14544714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 507931 - 508228
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
507931 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct |
508030 |
T |
|
| Q |
178 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
508031 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatc |
508130 |
T |
|
| Q |
278 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
508131 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
508228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 18040702 - 18040580
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtctt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
18040702 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttacatataatggatt-gcctgaaacgctacacgattttcttt-agtctt |
18040605 |
T |
|
| Q |
179 |
tctgggatcgggtattatattagga |
203 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18040604 |
tctgggatcgggtattatattagga |
18040580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 8241401 - 8241324
Alignment:
| Q |
298 |
actcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8241401 |
actcctattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
8241324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 6931866 - 6932164
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn--acatataatggatttgcctgaaacgctacacgattttcttttagtc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6931866 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtc |
6931965 |
T |
|
| Q |
177 |
tttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6931966 |
tttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatat |
6932065 |
T |
|
| Q |
277 |
ccttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6932066 |
ccttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcacatttgctgtgatgt |
6932164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 29732419 - 29732561
Alignment:
| Q |
131 |
acatataatggatttgcctgaaacgctacacgattttcttttagtctttctgggatcgggtattatattaggaagtctaggagt---agtattacttacc |
227 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||| |||| | |||||| |||| ||| |||||||||||||| || |||| ||||||||||||| |
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|
| T |
29732419 |
acatataatggatttgtccgaaacactacacgattttcatttaatgtttctgagatcaggtcttatattaggaagtttaagagtagcagtattacttacc |
29732518 |
T |
|
| Q |
228 |
aaccctattttttctgctttttcgttgggactggttcttgttt |
270 |
Q |
| |
|
|| || | ||||||| |||||||||||||| |||||||||||| |
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|
| T |
29732519 |
aatccaaatttttcttctttttcgttgggaatggttcttgttt |
29732561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 26290539 - 26290838
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn---acatataatggatttgcctgaaacgctacacgattttcttttagt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
26290539 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttttacatataatggatttgtctgaaatgctacacgattttcttttagt |
26290638 |
T |
|
| Q |
176 |
ctttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtata |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26290639 |
ctttctgggatcgggtattatattaggaagtttaggagtagtattacttaccaactctattttttctgctttttcgttgggactggttcttgtttgtata |
26290738 |
T |
|
| Q |
276 |
tccttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26290739 |
tccttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgt |
26290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 79 - 360
Target Start/End: Complemental strand, 9293118 - 9292837
Alignment:
| Q |
79 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293118 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct |
9293019 |
T |
|
| Q |
178 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9293018 |
ttctgggatcgggtattatattaggaagtctaggagtagtattacttaccaaccctattttttctgc-ttttcgttgggactggttcttgtttgtatatc |
9292920 |
T |
|
| Q |
278 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9292919 |
cttattatatattttatcaaactcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca |
9292837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 343
Target Start/End: Original strand, 169538 - 169676
Alignment:
| Q |
205 |
gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||||| ||||| | ||||||||||||||||||||||| ||| |||||| ||| ||| | |
|
|
| T |
169538 |
gtctaggagtagtattacttaccaaccccatttattctgccttttcgctgggattagttcttgtttgtatatccttattctattttttattaaattccta |
169637 |
T |
|
| Q |
305 |
ttttgtagctgcatcacagctacttatttacgtgggagc |
343 |
Q |
| |
|
|||||||||| |||| || |||||||| |||||||| |
|
|
| T |
169638 |
ctttgtagctgtcgcacaacttcttatttatgtgggagc |
169676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 39734964 - 39734920
Alignment:
| Q |
18 |
catcatgctccaattctatgctaaggtattaaaagtctttaatga |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39734964 |
catcatgctccaattctatgctaaggtattaaaagtctttaatga |
39734920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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