View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10515_high_2 (Length: 522)
Name: NF10515_high_2
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10515_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Complemental strand, 5690258 - 5689770
Alignment:
| Q |
16 |
aaaagctctgtttaatcatcaagtagtctctctctaacacctatctctcctctttttcacctctgttttaatttgaatggatgatagatgcttgtaattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690258 |
aaaagctctgtttaatcatcaagtagtctctctctaacacctatctctcctctttttcacctctgttttaatttgaatggatgatagatgcttgtaattc |
5690159 |
T |
|
| Q |
116 |
aaccttaaattcgcttaaaatgattgaaggaattactctatacagttatcctctttttcacaagggcacgctttaaatcagcacattaattgaagcaatc |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690158 |
aaccttaaattcgcttaaaatgcttgaaggaattactctatacagttatcctctttttcacaagggcacgctttaaatcagcacattaattgaagcaatc |
5690059 |
T |
|
| Q |
216 |
tgattcaatgaaaatcttttttgccaatggacatcgcaataaacacaaccttttcaaccaaaacatgtagaattgcttgtcagccaaaaatggtagacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690058 |
tgattcaatgaaaatcttttttgccaatggacatcgcaataaacacaaccttttcaaccaaaacatgtagaattgcttgtcagccaaaaatggtagacat |
5689959 |
T |
|
| Q |
316 |
ttctgtttcttaaacactacttcaaaatgatacaagttaaggctacacttagttttctcatttattcattaaaaatcccaaattgaattttcaaataatc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689958 |
ttctgtttcttaaacactacttcaaaatgatacaagttaaggctacacttagttttctcatttattcattaaaaatcccaaattgaattttcaaataatc |
5689859 |
T |
|
| Q |
416 |
atacagcacaattttgtaatcatgtttttgctccatgatatgagccatggagagtagaacaagcagtcacatatgtatcctcatctctg |
504 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689858 |
atacagcacatttttgtaatcatgtttttgctccatgatatgagccatggagagtagaacaagcagtcacatatgtatcctcatctctg |
5689770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 5690368 - 5690305
Alignment:
| Q |
103 |
atgcttgtaattcaaccttaaattcgcttaaaatgattgaaggaattactctatacagttatcc |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5690368 |
atgcttgtaattcaaccttaaattcgcttaaaatgcttgaaggagttactctatacagttatcc |
5690305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University