View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10515_high_3 (Length: 393)

Name: NF10515_high_3
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10515_high_3
NF10515_high_3
[»] chr2 (6 HSPs)
chr2 (6-376)||(34578661-34579034)
chr2 (191-376)||(34584598-34584783)
chr2 (211-376)||(34571401-34571566)
chr2 (206-377)||(34562599-34562773)
chr2 (255-346)||(13576386-13576477)
chr2 (6-60)||(34584402-34584456)
[»] chr8 (4 HSPs)
chr8 (225-376)||(41943952-41944103)
chr8 (221-377)||(25865707-25865863)
chr8 (221-362)||(44343977-44344110)
chr8 (255-346)||(43479673-43479764)
[»] chr1 (1 HSPs)
chr1 (226-376)||(7594101-7594251)
[»] chr5 (2 HSPs)
chr5 (252-346)||(12546995-12547089)
chr5 (252-346)||(12531530-12531624)
[»] scaffold0197 (1 HSPs)
scaffold0197 (255-346)||(31049-31140)
[»] chr7 (1 HSPs)
chr7 (255-346)||(21317612-21317703)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 34578661 - 34579034
Alignment:
Q  6 agagaagaagagaaaaataagtaaataatttgcagagaaaggaaaaacatagtaaaattatttaagtggaataatttgaagagaaaggaaaaactgataa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34578661 agagaagaagagaaaaataagtaaataatttgcagagaaaggaaaaacatagtaaaattatttaagtggaataatttgcagagaaaggaaaaactgataa 34578760  T
Q  106 gaatccgtaaccctaaacatgatcaccatggttaaggcagcataagagataactgatnnnnnnnnn---ctaaatcaaaaccctgaaatcattccaatac 202  Q
    ||||  |||||||||||||||||||||||||||| || ||||||| |||||||||||            |||||||||||||||||||||||||||||||    
T  34578761 gaatatgtaaccctaaacatgatcaccatggttacggaagcataaaagataactgataaaaaaaaaaaactaaatcaaaaccctgaaatcattccaatac 34578860  T
Q  203 cagaatagtaactagtctataaccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaatt 302  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34578861 cagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagttgaatatccttcaccataacggtgatcctcttagcatgaatt 34578960  T
Q  303 gcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34578961 gcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 34579034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 191 - 376
Target Start/End: Original strand, 34584598 - 34584783
Alignment:
Q  191 tcattccaataccagaatagtaactagtctataaccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctc 290  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34584598 tcattccaataccagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagttgaatatccttcaccataacggtgatcctc 34584697  T
Q  291 ttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34584698 ttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 34584783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 211 - 376
Target Start/End: Original strand, 34571401 - 34571566
Alignment:
Q  211 taactagtctataaccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaa 310  Q
    |||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||    
T  34571401 taactaatccatagccctaagcacgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaa 34571500  T
Q  311 attggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 376  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  34571501 attggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatg 34571566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 206 - 377
Target Start/End: Original strand, 34562599 - 34562773
Alignment:
Q  206 aatagtaactagtctataaccctaagcacg---ttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaatt 302  Q
    |||| ||||||||| |||||||||| ||||   ||||||||||||||| | |||||||||||||||||||  ||||| ||| | ||||||||||||||||    
T  34562599 aatactaactagtcaataaccctaaccacgacgttcaccacggatacggcaagcaagttgaatatccttaggcataatggtaaccctcttagcatgaatt 34562698  T
Q  303 gcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatga 377  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  34562699 gcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatga 34562773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 13576477 - 13576386
Alignment:
Q  255 gcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    ||||||||||||||||||  |||||  || | ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||    
T  13576477 gcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttc 13576386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 34584402 - 34584456
Alignment:
Q  6 agagaagaagagaaaaataagtaaataatttgcagagaaaggaaaaacatagtaa 60  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  34584402 agagaagaagagaaaaataagtaaataatgtgcagagaaaggaaatacacagtaa 34584456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 41944103 - 41943952
Alignment:
Q  225 ccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaa 324  Q
    |||||||||||||||||||| ||||| || ||||||||||| |||||   |||||  || | ||||||||||||||||||||||||||||||||||||||    
T  41944103 ccctaagcacgttcaccacgaatacggcgtgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaa 41944004  T
Q  325 acaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 376  Q
    |||| ||||||| |||||||||  |||||||||||||||| ||||| |||||    
T  41944003 acaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatg 41943952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 221 - 377
Target Start/End: Complemental strand, 25865863 - 25865707
Alignment:
Q  221 ataaccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcc 320  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||   |||||  || | ||||||||||||||||||||||||||| ||||||    
T  25865863 ataaccctaagcacgttcaccacgaatacgacgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcc 25865764  T
Q  321 tcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatga 377  Q
    |||||||| || || | |||||| ||  | |||||||||||||| ||||| ||||||    
T  25865763 tcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatga 25865707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 44344110 - 44343977
Alignment:
Q  221 ataaccctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcc 320  Q
    |||||||||||||||||||||||||||||        || |||||||||||   |||||  || | ||||||||||||||| ||||||||||||||||||    
T  44344110 ataaccctaagcacgttcaccacggatac--------agctgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcc 44344019  T
Q  321 tcaaacaaaccaaccaaataagcttccactgcttcctgaagt 362  Q
    |||||||| || || | |||||| ||  ||||||||||||||    
T  44344018 tcaaacaatcccacgagataagcctcagctgcttcctgaagt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 43479673 - 43479764
Alignment:
Q  255 gcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    ||||||||||||||||||  |||||  || | ||||||||||||||| || || |  || ||||| |||||||||||||| | |||||||||    
T  43479673 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttc 43479764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 376
Target Start/End: Original strand, 7594101 - 7594251
Alignment:
Q  226 cctaagcacgttcaccacggatacgacgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaa 325  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||   |||||  || | ||||||||||||||||||||||| |||||| ||||||||    
T  7594101 cctaagcacgttcaccacgaatgcgacgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaa 7594200  T
Q  326 caaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatg 376  Q
    ||| |||||||  ||||| ||  |||||||||||||||| |||||||||||    
T  7594201 caatccaaccaggtaagcctcagctgcttcctgaagtgcaagaactgcatg 7594251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 12546995 - 12547089
Alignment:
Q  252 cgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    |||||||||||||||||||||  ||| |  || | ||||||||||||||| ||||| | ||| ||||| |||||||||||||| | |||||||||    
T  12546995 cgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc 12547089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 12531624 - 12531530
Alignment:
Q  252 cgagcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    ||||| |||||||||||||||  ||| |  || | ||||||||||||||| ||||| | ||| ||||| |||||||||||||| | |||||||||    
T  12531624 cgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc 12531530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 31140 - 31049
Alignment:
Q  255 gcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    ||||||||||||||||||  |||||  || |  |||||||||||||| || || | ||| ||||| |||||||||||||| | |||||||||    
T  31140 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttc 31049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 21317703 - 21317612
Alignment:
Q  255 gcaagttgaatatccttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 346  Q
    ||||||||||||||||||  |||||  || |  |||||||||||||| || || | ||| ||||| |||||||||||||| | |||||||||    
T  21317703 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttc 21317612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University