View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10515_low_12 (Length: 227)

Name: NF10515_low_12
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10515_low_12
NF10515_low_12
[»] chr2 (2 HSPs)
chr2 (1-227)||(3081274-3081499)
chr2 (1-90)||(10449311-10449403)
[»] chr1 (5 HSPs)
chr1 (1-220)||(40908394-40908613)
chr1 (1-90)||(12606421-12606513)
chr1 (156-218)||(49195390-49195453)
chr1 (138-218)||(46566649-46566729)
chr1 (132-218)||(12606545-12606631)
[»] scaffold0238 (2 HSPs)
scaffold0238 (1-90)||(5439-5531)
scaffold0238 (138-210)||(5329-5401)
[»] chr7 (1 HSPs)
chr7 (138-218)||(10646023-10646103)
[»] chr4 (1 HSPs)
chr4 (156-218)||(31525434-31525497)
[»] chr3 (1 HSPs)
chr3 (156-218)||(33366005-33366068)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3081499 - 3081274
Alignment:
Q  1 agagaatttgggggaatggatggagtgatgttggttcccgagtaagtgatgagagagagggagaaatcttgacataagtgtatcgctttaggaagatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  3081499 agagaatttgggggaatggatggagtgatgttggttcccgagtaagtgatgagagagagggagaaatcttgacataag-gcatcgctttaggaagatgaa 3081401  T
Q  101 aagagtttgaatcatagtgtaaaagcaaatgttctggttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggc 200  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||    
T  3081400 aagagtttgaatcatagtgtaaaagcaaattttctgattgatttatctaggtacatgaaaggtcatgaaagcaacggctgagatttaatgtgtgattggc 3081301  T
Q  201 agatgagattaacattaaatgcgtgtt 227  Q
    |||||||||||||||||||||||||||    
T  3081300 agatgagattaacattaaatgcgtgtt 3081274  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10449403 - 10449311
Alignment:
Q  1 agagaatttgggggaatggatggagtgatgtt--ggttcccgagtaagtgatgagagagagggagaaatcttgacat-aagtgtatcgcttta 90  Q
    |||||||||| |||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10449403 agagaatttgtgggagtggatggagtgatgttctgtttcccgagtaagtgatgagagagagggagaaatcttgacataaagtgtatcgcttta 10449311  T

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Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40908613 - 40908394
Alignment:
Q  1 agagaatttgggggaatggatggagtgatgttggttcccgagtaagtgatgagagagagggagaaatcttgacataagtgtatcgctttaggaagatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40908613 agagaatttgggggaatggatggagtgatgttggttcccgagtaagtgatgagagagagggagaaatcttgacataagtgtttcgctttaggaagatgaa 40908514  T
Q  101 aagagtttgaatcatagtgtaaaagcaaatgttctggttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggc 200  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  40908513 aagagtttgaatcatagcgtaaaagcaaatgttctgattggtttatctaaatacatgaaaggtcatgaaagcaacggctgagatttaacgtgtggttggc 40908414  T
Q  201 agatgagattaacattaaat 220  Q
    ||||||||||||||||||||    
T  40908413 agatgagattaacattaaat 40908394  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12606421 - 12606513
Alignment:
Q  1 agagaatttgggggaatggatggagtgatgtt--ggttcccgagtaagtgatgagagagagggagaaatcttgacat-aagtgtatcgcttta 90  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  12606421 agagaatttgggggagtggatggagtgatgttccgtttcccgagtaagtgatgagagagagggagaaatcttgacataaagtgtatagcttta 12606513  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 49195390 - 49195453
Alignment:
Q  156 tgaaaagtcatg-aaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    ||||| |||||| ||| |||||||||  ||||| ||||||||||||||||||||||||||||||    
T  49195390 tgaaaggtcatgtaaaacaacggctgtgatttagtgtgtggttggcagatgagattaacattaa 49195453  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 46566729 - 46566649
Alignment:
Q  138 ttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    |||| ||||||||| |||||||| ||||| | | ||| |||||| |||||   ||||||||||||||||||||| ||||||    
T  46566729 ttgggttatctaggaacatgaaaggtcatcagatcaaaggctgagatttaggatgtggttggcagatgagattagcattaa 46566649  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 12606545 - 12606631
Alignment:
Q  132 ttctggttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    ||||| ||| |||||||||  |||||||| ||||| | | ||| |||||| |||||  |||||||||||||||| ||||| ||||||    
T  12606545 ttctgattgatttatctagaaacatgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggattagcattaa 12606631  T

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Target: scaffold0238 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5531 - 5439
Alignment:
Q  1 agagaatttgggggaatggatggagtgatgtt--ggttcccgagtaagtgatgagagagagggagaaatcttgacat-aagtgtatcgcttta 90  Q
    ||||||||||||||| ||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5531 agagaatttgggggagtggatggagtgatattccgtttcccgagtaagtgatgagagagagggagaaatcttgacataaagtgtatagcttta 5439  T

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Target: scaffold0238; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 5401 - 5329
Alignment:
Q  138 ttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggcagatgagatt 210  Q
    |||||||||||||  |||||||| ||||| | | ||| |||||| |||||  |||||||||||||||| ||||    
T  5401 ttggtttatctagaaacatgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggatt 5329  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 10646023 - 10646103
Alignment:
Q  138 ttggtttatctaggtacatgaaaagtcatgaaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    |||| ||||||||| |||||||  ||||| | | ||| |||||| |||||  |||||||||||||||||||||| ||||||    
T  10646023 ttgggttatctaggaacatgaatggtcatcagatcaaaggctgagatttagggtgtggttggcagatgagattagcattaa 10646103  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 31525434 - 31525497
Alignment:
Q  156 tgaaaagtcatg-aaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    ||||| |||||| ||| |||||||||  ||||| |||||||||||||| |||||||||||||||    
T  31525434 tgaaaggtcatgtaaaacaacggctgtgatttagtgtgtggttggcagttgagattaacattaa 31525497  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 33366068 - 33366005
Alignment:
Q  156 tgaaaagtcatg-aaagcaacggctgatatttaatgtgtggttggcagatgagattaacattaa 218  Q
    ||||| |||||| ||| |||||||||  ||||| |||||||||||||| |||||||||||||||    
T  33366068 tgaaaggtcatgtaaaacaacggctgtgatttagtgtgtggttggcagttgagattaacattaa 33366005  T

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