View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10515_low_3 (Length: 453)
Name: NF10515_low_3
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10515_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 29704550 - 29704295
Alignment:
| Q |
146 |
ggctgagatctgcactgcaagcagaagagataatcaagaagcatggtgttgctcttggcaagaaatgacactaggctaaaaaaccaccaatcagtaatgt |
245 |
Q |
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| T |
29704550 |
ggctgagatctgcactgcaagcagaagagataatcaagaagcatggtgttgctcttggcaagaaatgacactaggctaaaaaaccaccaatcagtaatgt |
29704451 |
T |
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| Q |
246 |
tacaaaccaatatcaactggggtaattgagataaattagtttaatgtcacaatttatctgaggtttatatttcatatcttttggtttttcaagagttgtg |
345 |
Q |
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| T |
29704450 |
tacaacccaatatcaactggggtaattgagataaattagtttaatgtcacaatttatctgaggtttatatttcatatcttttggtttttgaagagttgtg |
29704351 |
T |
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| Q |
346 |
gatgcaactattgtccttaagattttgaggtcaaacggggaatatgctgcacattt |
401 |
Q |
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| T |
29704350 |
gatgcaactattgtccttaagattttgaggtcaaacagggaatatgctgcacattt |
29704295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 252 - 442
Target Start/End: Original strand, 30081397 - 30081581
Alignment:
| Q |
252 |
ccaatatcaactggggtaattgagataaattagtttaatgtcacaatttatctgaggtttatatttcatatcttttggtttttcaagagttgtggatgca |
351 |
Q |
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| T |
30081397 |
ccaatatcaactggggtcattgagataaattagttcagtgttgcaatttatttgtggtttatatttcatatcttttggatttttaagagt-----accaa |
30081491 |
T |
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| Q |
352 |
actattgtccttaagattttgaggtcaaacggggaatatgctgcacattttaattacaagaatttaagttcctttacatagccttgttcat |
442 |
Q |
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| T |
30081492 |
actattgtccttaagattttgaggtcaaatagggaatatgctgctc-ttttaattacaagaatttgagttcctttacatagccttgttcat |
30081581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 6692374 - 6692320
Alignment:
| Q |
65 |
acacatacaccgacacacacatttatatatgcggcttttatgaattttatagaat |
119 |
Q |
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| T |
6692374 |
acacatgcactgatacacacatttatgtatgcggcttttatgaattttacagaat |
6692320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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