View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10515_low_5 (Length: 329)

Name: NF10515_low_5
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10515_low_5
NF10515_low_5
[»] chr8 (2 HSPs)
chr8 (20-321)||(3466651-3466953)
chr8 (92-321)||(41980215-41980446)
[»] chr6 (1 HSPs)
chr6 (90-321)||(10825277-10825509)
[»] chr7 (2 HSPs)
chr7 (210-321)||(42739673-42739784)
chr7 (210-321)||(48458926-48459037)
[»] chr1 (1 HSPs)
chr1 (210-321)||(48510178-48510289)
[»] chr4 (3 HSPs)
chr4 (210-321)||(42945637-42945748)
chr4 (210-321)||(49519000-49519111)
chr4 (61-89)||(43508911-43508939)
[»] chr3 (1 HSPs)
chr3 (61-91)||(39069016-39069046)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 3466651 - 3466953
Alignment:
Q  20 aattcaatttggatcatctcctcccaatcactctttatttcgagcaattcttgtgtggacctaaagatttagtgtctatttggttgagtgtttccggtcc 119  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||    
T  3466651 aattcaatttcgaccatctcctcccaatcactctttatttcgagcaattcttgtgtggacctaaagatttagtgtctgtttggttgagcgtttccgctcc 3466750  T
Q  120 ccaaatgcatgtttgcaagcccaaacacggttttctcattttctgagatgtttggatgcaaccaaaagtaattctgaaaactca-atttagacccaaaac 218  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3466751 ccaaacgcaggtttgcaagcccaaacatggttttctcattttctgagatgtttggatgcaaccaaaagtaattctgaaaactcacttttagacccaaaac 3466850  T
Q  219 gtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgattttgctgacaaatatacttttccctttttacctat 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3466851 gtgggtttagaagaagccacatttcttagcttatgcggccactcaaacgtggttgtagatttgattttgctgacaaatatacttttccctttttacccat 3466950  T
Q  319 gct 321  Q
    |||    
T  3466951 gct 3466953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 92 - 321
Target Start/End: Original strand, 41980215 - 41980446
Alignment:
Q  92 tgtctatttggttgagtgtttccggtccccaaatgcatgtttgcaagcccaaacacggttttctcattttctgagatgtttggatgcaaccaaaagtaat 191  Q
    ||||| |||||||||| |||| || |||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||    
T  41980215 tgtctgtttggttgagcgttttcgctccccaaacgcaggtttgcgagcccaaacacggttttatcattttctgagatgtttggatacaaccaaaagcaat 41980314  T
Q  192 tctgaaaactca-atttagacccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactc-aaacgtggttgtagatttgattttgct 289  Q
    ||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||| || |||| ||||||||||| | ||||| |||| ||    
T  41980315 tctgaaaactcacttttagacccaaaacgtaagtttagaagaagccacatttcttagcttctgcagcaactcaaaacgtggttgcaaatttgtttttact 41980414  T
Q  290 gacaaatatacttttccctttttacctatgct 321  Q
    |||||||||||||||||||||||||| |||||    
T  41980415 gacaaatatacttttccctttttacccatgct 41980446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 90 - 321
Target Start/End: Original strand, 10825277 - 10825509
Alignment:
Q  90 agtgtctatttggttgagtgtttccggtccccaaatgcatgtttgcaagcccaaacacggttttctcattttctgagatgtttggatgcaaccaaaagta 189  Q
    ||||||| |||||||||||||||||| ||||||||  || |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||    
T  10825277 agtgtctgtttggttgagtgtttccgctccccaaacacaggtttgcaaacccaaacgcggttttatcattttctgagatgtttggatgcaaccaaaatta 10825376  T
Q  190 attctgaaaactcaattt-agacccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgattttgc 288  Q
    | |||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||    
T  10825377 agtcttgaaactcacttttagacccaaaacgtgggtttagaagaagccacatttcttagcttctgcggcaactcaaacgtggttgcagattcgcttttgc 10825476  T
Q  289 tgacaaatatacttttccctttttacctatgct 321  Q
    ||||||||||||||||||||||||||| |||||    
T  10825477 tgacaaatatacttttccctttttacccatgct 10825509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 42739673 - 42739784
Alignment:
Q  210 acccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgatttt-gctgacaaatatacttttccct 308  Q
    |||||||||||||||||||||||||||| |   | ||||||||||||| |||||||| |||||| | ||||| |||| |||||||||| || ||||||||    
T  42739673 acccaaaacgtgggtttagaagaagccagaaaacatagcttctgcggcaactcaaacttggttggaaatttgtttttagctgacaaatgta-ttttccct 42739771  T
Q  309 ttttacctatgct 321  Q
     |||||| |||||    
T  42739772 atttacccatgct 42739784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 48458926 - 48459037
Alignment:
Q  210 acccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgatttt-gctgacaaatatacttttccct 308  Q
    |||||||||||||||||||||||||||| |   | |||||| |||||| |||||||| |||||| | ||||| |||| ||||||| || || ||||||||    
T  48458926 acccaaaacgtgggtttagaagaagccagaaaacatagcttatgcggcaactcaaacttggttggaaatttgcttttagctgacagatgta-ttttccct 48459024  T
Q  309 ttttacctatgct 321  Q
     |||||| |||||    
T  48459025 atttacccatgct 48459037  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 48510178 - 48510289
Alignment:
Q  210 acccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgatttt-gctgacaaatatacttttccct 308  Q
    |||||||||||||||||||||||||||| |   | ||||||||||||| |||||||| |||||  | ||||| |||| |||||||||| || ||||||||    
T  48510178 acccaaaacgtgggtttagaagaagccagaaaacatagcttctgcggcaactcaaacttggttcaaaatttgtttttagctgacaaatgta-ttttccct 48510276  T
Q  309 ttttacctatgct 321  Q
     |||||| |||||    
T  48510277 atttacccatgct 48510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 42945748 - 42945637
Alignment:
Q  210 acccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgatttt-gctgacaaatatacttttccct 308  Q
    |||||||||||||||||||||||||||| |   | |||||| || ||| |||||||| |||||| | ||||| |||| |||||||||| || ||||||||    
T  42945748 acccaaaacgtgggtttagaagaagccagaaaacatagcttttggggcaactcaaacttggttggaaatttgtttttagctgacaaatgta-ttttccct 42945650  T
Q  309 ttttacctatgct 321  Q
     |||||| |||||    
T  42945649 atttacccatgct 42945637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 49519000 - 49519111
Alignment:
Q  210 acccaaaacgtgggtttagaagaagccacatttcttagcttctgcggccactcaaacgtggttgtagatttgatttt-gctgacaaatatacttttccct 308  Q
    |||||||||||||||||||||||||||| |   | ||||||||| ||| |||||||| |||||| | ||||| |||| ||| |||||| || ||||||||    
T  49519000 acccaaaacgtgggtttagaagaagccagaaaacatagcttctgtggcaactcaaacttggttggaaatttgcttttagctaacaaatgta-ttttccct 49519098  T
Q  309 ttttacctatgct 321  Q
     |||||| |||||    
T  49519099 atttacccatgct 49519111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 43508939 - 43508911
Alignment:
Q  61 gagcaattcttgtgtggacctaaagattt 89  Q
    |||||||||||||||||||||||||||||    
T  43508939 gagcaattcttgtgtggacctaaagattt 43508911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 39069046 - 39069016
Alignment:
Q  61 gagcaattcttgtgtggacctaaagatttag 91  Q
    |||||||||||||||||||||||||||||||    
T  39069046 gagcaattcttgtgtggacctaaagatttag 39069016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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