View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10515_low_6 (Length: 287)
Name: NF10515_low_6
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10515_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 50495536 - 50495806
Alignment:
| Q |
1 |
aagttgactctatataaagccaagtactttgtaatataatgcaatgagacatttaccaacttaacatgaagtgcataaagaattacgtgagtgttccatg |
100 |
Q |
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| T |
50495536 |
aagttgactctatataaagccaagtactttgtaatataatgcaatgagacatttaccaacttaacatgaggtgcataaagaattacgtgagtgttccatg |
50495635 |
T |
|
| Q |
101 |
agaaaaagaaaactaaaatatatatgtgccacatcatttttatagcatatatgtcagtgattattcatttgtatatttgaaatgaacttgcagtaggaag |
200 |
Q |
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| T |
50495636 |
agaaaaagaaaactaaaatatatatgtgccacatcatttttatagcatatatgtcagtgattattcatttgtatatttgaaatgaacttgcagtaggaag |
50495735 |
T |
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| Q |
201 |
aaggtgatctataaagaaaaatgcatattgtggttggttttaatagtttcctaggatacatgaagaaatag |
271 |
Q |
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| T |
50495736 |
aaggtgatctataaagaaaaatgcatattgtggttggttttaatagtttcctaggatacatgaacaaatag |
50495806 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 11218896 - 11218839
Alignment:
| Q |
207 |
atctataaagaaaaatgcatattgtggttggttttaatagtttcctaggatacatgaa |
264 |
Q |
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| T |
11218896 |
atctataaagaaaaatgcagattttagttggttttgatagtttcctaggatacatgaa |
11218839 |
T |
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