View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10515_low_8 (Length: 250)

Name: NF10515_low_8
Description: NF10515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10515_low_8
NF10515_low_8
[»] chr5 (2 HSPs)
chr5 (4-239)||(36869406-36869642)
chr5 (23-81)||(24395447-24395506)
[»] chr8 (1 HSPs)
chr8 (38-239)||(9107804-9108004)
[»] chr6 (1 HSPs)
chr6 (106-239)||(27994349-27994482)
[»] chr7 (2 HSPs)
chr7 (146-225)||(36903149-36903228)
chr7 (23-77)||(36903643-36903696)
[»] chr4 (5 HSPs)
chr4 (126-196)||(39655341-39655411)
chr4 (129-192)||(24613864-24613925)
chr4 (132-190)||(11907057-11907116)
chr4 (26-83)||(24404204-24404261)
chr4 (122-188)||(11911305-11911371)
[»] scaffold0227 (1 HSPs)
scaffold0227 (132-235)||(15751-15853)
[»] chr2 (5 HSPs)
chr2 (36-83)||(21190929-21190976)
chr2 (36-83)||(30175535-30175582)
chr2 (36-83)||(45156350-45156397)
chr2 (27-83)||(13800852-13800909)
chr2 (24-83)||(21666036-21666096)
[»] chr1 (1 HSPs)
chr1 (23-83)||(39135065-39135126)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 36869642 - 36869406
Alignment:
Q  4 tgtgtttggctcacttgtcgggccggaccttaggggtgcaaagagctcaatggagttgggactctccaaggtatgggcctnnnnnnnnnta--tataact 101  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||  |||||||||| | ||          |  ||||||     
T  36869642 tgtgtttggctcacttgtagggccggactttgggggtgcaaagagctcaatggagttgggacttcccaaggtatgagtctaaaaaagaaaaattataacc 36869543  T
Q  102 tagtagtactaccccactttaaaaa-tatctttatgagaactctgataccactcgtgtttctttccttattctctttctctcttctgatactcataggac 200  Q
    |||||||| ||| |||||  ||||| |||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||    
T  36869542 tagtagtagtactccactaaaaaaaatatcttt--gagaactctgataccactcgtgtttctttccttattgtctgtctctcttttgatactcatacgac 36869445  T
Q  201 gtgttacatcaccaccactcatccatcagacttcccttt 239  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  36869444 gtgttatatcaccaccactcatccatcagacttcccttt 36869406  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 24395447 - 24395506
Alignment:
Q  23 gggccggaccttaggg-gtgcaaagagctcaatggagttgggactctccaaggtatgggc 81  Q
    |||||||||||||||| |||||||||||||||||||| | || ||| |||||||||||||    
T  24395447 gggccggaccttagggcgtgcaaagagctcaatggagctaggcctccccaaggtatgggc 24395506  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 9107804 - 9108004
Alignment:
Q  38 ggtgcaaagagctcaatggagttgggactctccaaggtatgggcctnnnnnnnnntatataacttagtagtactaccccactttaaaaatatctttatga 137  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||         |||||| |  |||||||||||||||||  || || ||| ||||||    
T  9107804 ggtgcaaacagctcaatggagttgggcctccccaaggtatgggcctaaaaaaatatatatagcccagtagtactaccccactaaaacaa-atccttatga 9107902  T
Q  138 gaactctgataccactcgtgtttctttccttattctctttctctcttctgatactcataggacgtgttacatcaccaccactcatccatcagacttccct 237  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  9107903 gaactctgatactacctgtgtttctttccttattctctttctctcttctgattctcatacgacgtgttacatcaccaccactcctccatcagacttccct 9108002  T
Q  238 tt 239  Q
    ||    
T  9108003 tt 9108004  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 27994349 - 27994482
Alignment:
Q  106 agtactaccccactttaaaaatatctttatgagaactctgataccactcgtgtttctttccttattctctttctctcttctgatactcataggacgtgtt 205  Q
    |||||||| |||||| |||||  |  ||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  27994349 agtactactccacttaaaaaaatttcttatgagaactctgatatcatccgtgtttctttccttattctctttctctcttatgatactcatacgacgtgtt 27994448  T
Q  206 acatcaccaccactcatccatcagacttcccttt 239  Q
    |||| |||||||||| ||||||| ||||||||||    
T  27994449 acataaccaccactcctccatcatacttcccttt 27994482  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 36903228 - 36903149
Alignment:
Q  146 ataccactcgtgtttctttccttattctctttctctcttctgatactcataggacgtgttacatcaccaccactcatcca 225  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  36903228 ataccacccgtgtttctttcgttattctctttctctcttctgatacgcatacgacgtgttacatcaccaccactcctcca 36903149  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 36903696 - 36903643
Alignment:
Q  23 gggccggaccttaggggtgcaaagagctcaatggagttgggactctccaaggtat 77  Q
    |||||||| ||| ||||||||||||||||||| ||| |||| |||||||||||||    
T  36903696 gggccggatctt-ggggtgcaaagagctcaattgagctgggcctctccaaggtat 36903643  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 39655411 - 39655341
Alignment:
Q  126 atatctttatgagaactctgataccactcgtgtttctttccttattctctttctctcttctgatactcata 196  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  39655411 atatccttatgagaactctgataccacccgtgtttctttccttattctctttctctcttctaatactcata 39655341  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 24613864 - 24613925
Alignment:
Q  129 tctttatgagaactctgataccactcgtgtttctttccttattctctttctctcttctgatact 192  Q
    ||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  24613864 tctttttgagaactctgataccat--gtgtttctttccttattctctttctctcttctgatact 24613925  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 11907116 - 11907057
Alignment:
Q  132 ttatgagaactctgataccactcgtgtt-tctttccttattctctttctctcttctgata 190  Q
    ||||||||||||||||||||| |||  | | |||||||||||||||||||||||||||||    
T  11907116 ttatgagaactctgataccacacgtaatatttttccttattctctttctctcttctgata 11907057  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 24404204 - 24404261
Alignment:
Q  26 ccggaccttaggggtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||| |||| |||||||||| |||||||||||| |||| ||| |||||||||||||||    
T  24404204 ccggtccttgggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcct 24404261  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 11911371 - 11911305
Alignment:
Q  122 aaaaatatctttatgagaactctgataccactcgtgtt-tctttccttattctctttctctcttctga 188  Q
    ||||| |||||| |||||||||||||||||| |||  | | |||||||||||||||||||||||||||    
T  11911371 aaaaaaatcttt-tgagaactctgataccacacgtaatatttttccttattctctttctctcttctga 11911305  T

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Target: scaffold0227 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 15751 - 15853
Alignment:
Q  132 ttatgagaactctgataccactcgtgtttctttccttattctctttctctcttctgatactcataggacgtgttacatcaccaccactcatccatcagac 231  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||  | | ||| ||||| |||||||| ||||||||||    
T  15751 ttatgagaactctaataccac-catgtttctttccttattctctttctctcttctgatactcgtaccatgcgttgcatcatcaccactcctccatcagac 15849  T
Q  232 ttcc 235  Q
    ||||    
T  15850 ttcc 15853  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 21190976 - 21190929
Alignment:
Q  36 ggggtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||||||||| |||||||||||| |||| ||| |||||||||||||||    
T  21190976 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcct 21190929  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 30175535 - 30175582
Alignment:
Q  36 ggggtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||||||||| |||||||||||| |||| ||| |||||||||||||||    
T  30175535 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcct 30175582  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 45156397 - 45156350
Alignment:
Q  36 ggggtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||||||||| |||||||||||| |||| ||| |||||||||||||||    
T  45156397 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcct 45156350  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 13800909 - 13800852
Alignment:
Q  27 cggaccttaggg-gtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||||||| ||| ||||||| ||||||||||||||||| || ||||||||||| ||||    
T  13800909 cggaccttggggtgtgcaaaaagctcaatggagttgggtctttccaaggtatgagcct 13800852  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 21666096 - 21666036
Alignment:
Q  24 ggccggaccttaggg-gtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    ||||||||||| ||| |||||| ||||||||||||  |||| ||| |||||||||||||||    
T  21666096 ggccggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgggcct 21666036  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 39135126 - 39135065
Alignment:
Q  23 gggccggaccttaggg-gtgcaaagagctcaatggagttgggactctccaaggtatgggcct 83  Q
    |||||| ||||| ||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  39135126 gggccgaaccttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcct 39135065  T

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