View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10516_low_1 (Length: 296)
Name: NF10516_low_1
Description: NF10516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10516_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4242378 - 4242099
Alignment:
| Q |
1 |
ccaagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaatagcgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgag |
100 |
Q |
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| T |
4242378 |
ccaagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgag |
4242279 |
T |
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| Q |
101 |
aaagtaaaaagcatacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242278 |
aaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtg |
4242179 |
T |
|
| Q |
201 |
cgttaaatgaatgtttacgtatcaatggtcatgaatctctgctctacatgacctgtttacgtatcttttgttggctaatt |
280 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4242178 |
cgttaaatgaatgtttacatatcaatgctcatgaatctctgctctacatgacctgtttacatatcttttgttggctaatt |
4242099 |
T |
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