View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10516_low_3 (Length: 240)
Name: NF10516_low_3
Description: NF10516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10516_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36288356 - 36288279
Alignment:
| Q |
1 |
ctcctatagcataatctacaaaacaataaaattattaagcatataataatcacaactatcctttgaaattattggatt |
78 |
Q |
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| T |
36288356 |
ctcctatagcataatctacaaaacaataaaattattaagcatataataatcacaactatcctttgaaattattggatt |
36288279 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 35037131 - 35037179
Alignment:
| Q |
7 |
tagcataatctacaaaacaataaaattattaagcatataataatcacaa |
55 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
35037131 |
tagcatactctacaaaacaataaaaaaattaagcatataataatcacaa |
35037179 |
T |
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