View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10516_low_5 (Length: 237)
Name: NF10516_low_5
Description: NF10516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10516_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35676945 - 35676720
Alignment:
| Q |
1 |
ctcagaaggtttaatacactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaactgtagaaaaggatatcaaaga |
100 |
Q |
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| T |
35676945 |
ctcagaaggtttaatacactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaaccgtagaaaaggatatcaaaga |
35676846 |
T |
|
| Q |
101 |
ttttacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35676845 |
ttttacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaa |
35676746 |
T |
|
| Q |
201 |
ataaagaagcattaaagggccatatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35676745 |
ataaagaagcattaaagggccatatt |
35676720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 35655862 - 35655640
Alignment:
| Q |
4 |
agaaggtttaatacactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaactgtagaaaaggatatcaaagattt |
103 |
Q |
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||||||| ||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
35655862 |
agaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattt |
35655763 |
T |
|
| Q |
104 |
tacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaaata |
203 |
Q |
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|| | |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || || ||||| |||||||| |
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| T |
35655762 |
taagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaata |
35655663 |
T |
|
| Q |
204 |
aagaagcattaaagggccatatt |
226 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35655662 |
aagaagcattaaagggccatatt |
35655640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35641529 - 35641306
Alignment:
| Q |
1 |
ctcagaaggtttaatacactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaactgtagaaaaggatatcaaaga |
100 |
Q |
| |
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|||| ||||| ||| ||||| ||||| ||||||||| ||||||||||||||||| |||||||||| ||| ||||||||| || || | ||||||||||| |
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| T |
35641529 |
ctcaaaaggtgtaacacactaagactccttacttgtctccaatactcaccatatgcacaacttgctacacctttggaaccatacaacatgatatcaaaga |
35641430 |
T |
|
| Q |
101 |
ttttacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaa |
200 |
Q |
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||||||| ||||||||||||| ||||| | ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||| || || |
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| T |
35641429 |
ttttacgttgtggcctatcagagaagatcaagtcatgagttttcattacctgacttgctgcatcagctgaggaaactacaaccactggtaccttccctaa |
35641330 |
T |
|
| Q |
201 |
ataaagaagcattaaagggccata |
224 |
Q |
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|||||||||||||| ||| ||||| |
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| T |
35641329 |
ataaagaagcattagaggaccata |
35641306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 35646412 - 35646224
Alignment:
| Q |
38 |
tccaatactcaccatatccacaacttgccacatctttggaactgtagaaaaggatatcaaagattttacgatgtggcctatcagcgaagaccgagtcatg |
137 |
Q |
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||||||| ||||||||||||||||| |||| ||||||||||| || ||||| || ||| |||||||||| ||| ||||||| ||| ||| | ||||| |
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| T |
35646412 |
tccaatattcaccatatccacaactagccatatctttggaaccatataaaagtatgtcattcattttacgatatggtctatcagagaaaaccaaatcatg |
35646313 |
T |
|
| Q |
138 |
agttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaaataaagaagcattaaagggccatatt |
226 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
35646312 |
agttttcattacttttcttgctgtatcagcagaggaaattacaagtactggaaccttcccaaaataaagaagcattaaagggccatatt |
35646224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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