View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10517_high_7 (Length: 249)
Name: NF10517_high_7
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9592673 - 9592904
Alignment:
| Q |
1 |
caaatacttaacaacattgtatttgtaattggtacctgctgcagaatatcacaagcatgtgattcgtggttttccaaatatgaatttgcttcaaattgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9592673 |
caaatacttaacaacattgtatttgtaattggtacctgctacagaatatcacaagcatgtgattcgtggttttccaaatatgaatttgcttcaaattgac |
9592772 |
T |
|
| Q |
101 |
cagaaaaacataaagtacaacaaccagattaatagtaagaaatttatcaggaaagattaagattaagtatatgcacatttcttaaagaggagaaattaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
9592773 |
cagaaaaacataaagtacaacaaccagattaatagtaagaaatttatcagga------aagattaagtatatgcacatttctttaagagcagaaattaca |
9592866 |
T |
|
| Q |
201 |
tgcaaagataacattgaaatttaaagttcctaattcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9592867 |
tgcaaagataacattgaaatttaaagttcctaattcat |
9592904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 29014680 - 29014630
Alignment:
| Q |
98 |
gaccagaaaaacataaagtacaacaaccagattaatagtaagaaatttatc |
148 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
29014680 |
gaccacaataacataaagtacaactaccagatcaatagtaagaaagttatc |
29014630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University