View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_high_9 (Length: 243)
Name: NF10517_high_9
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 52686855 - 52686623
Alignment:
| Q |
19 |
gcataaattaatactt----tcctccgccccatacttctacgtatcatagttaagaatattgtgtgacagtcagaaaattnnnnnnnnnnnnntaa---- |
110 |
Q |
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| T |
52686855 |
gcataaattaatacttaatttcctccgccccatacttctacgtatcatagttaagaatattgtgtgacagtcagaaattttttttaaaaaaaaaaaaaaa |
52686756 |
T |
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| Q |
111 |
gaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattgacatgaacaatttacagtttattgata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52686755 |
gaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattaacatgaacaatttacagtttattgata |
52686656 |
T |
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| Q |
211 |
tttttaggtaaagaaattaactcattttcccat |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52686655 |
tttttaggtaaagaaattaactcattttcccat |
52686623 |
T |
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