View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10517_low_1 (Length: 420)
Name: NF10517_low_1
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 176 - 403
Target Start/End: Complemental strand, 23826735 - 23826508
Alignment:
| Q |
176 |
acaaactccttaatatcgtttgcaaaactttctagtccactggattttcttgttgcatcctacatttgtttttagctagttgctctcactagagacatcg |
275 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23826735 |
acaaactccttaatatggtttgcaaaactttctagtccactggattttcttgttgcatcctacatttgtttttagctagttgctctcactagagacatcg |
23826636 |
T |
|
| Q |
276 |
gacggtagtaagtactaagtaggcttttcgatctcaaatcaacagtcaaaatttgtacatttaatttcctaactatgtaatttgaatcgtccaatcttaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23826635 |
gacggtagtaagtactaagtaggctttccgatcttaaatcaacggtcaaaatttgtacatttaatttcctaactatgtaatttgaatcgtccaatcttaa |
23826536 |
T |
|
| Q |
376 |
atcaattactgatatttattaatgtttg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23826535 |
atcaattactgatatttattaatgtttg |
23826508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 23826898 - 23826772
Alignment:
| Q |
14 |
agacatatgagaaagatgctgagaacgaaggaaagtgagtatggtgattcatgcatgtaacatcacattcattgtattgtagtacatgttatgggaacag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23826898 |
agacatatgagaaagatgctgagaacgaaggaaagtgagtatggtgattcatgcatgtaacatcacattcattgtattgtagtgcatgttatgggaacag |
23826799 |
T |
|
| Q |
114 |
aagcatggtgtaactgtaatggacccc |
140 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
23826798 |
aagcatggtgtaactgtaagggacccc |
23826772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 23817341 - 23817301
Alignment:
| Q |
100 |
tgttatgggaacagaagcatggtgtaactgtaatggacccc |
140 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23817341 |
tgttatgggaatagaagcatggtgtaactgtaatggacccc |
23817301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 23830952 - 23830920
Alignment:
| Q |
38 |
acgaaggaaagtgagtatggtgattcatgcatg |
70 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
23830952 |
acgaaggaaggtgagtatggtgattcatgcatg |
23830920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University