View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_low_10 (Length: 250)
Name: NF10517_low_10
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44720355 - 44720594
Alignment:
| Q |
1 |
aagcggttactaaaatagaacaatcatcttatttgaaatggtagatctaatttatcattattctaagcatggagttacatcctatacaaatttgtaagtc |
100 |
Q |
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| T |
44720355 |
aagcggttactaaaatagaacaatcatcttatttgaaatggtaggtctaatttatcattattctaagcatggagttacatcctatacaaatttgtaagtc |
44720454 |
T |
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| Q |
101 |
atataacaaacctaggtttatcgagtatggcagcacttgagtttttaatgtgacgggaaatattatcttgaaaagttaactgtagacgaaattaagttac |
200 |
Q |
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| T |
44720455 |
atataacaaacctaggtttatcgagtatggcagcacttgagtttttaatgtgacgggaaatattatcttgaaaagttaactgtagacgaaattaagttac |
44720554 |
T |
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| Q |
201 |
ttactgcatatggcagggaaaatatgtgcttatgcctatg |
240 |
Q |
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| T |
44720555 |
ttactgcatatggcagggaaaatatgtgcttatgcctatg |
44720594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 38672672 - 38672782
Alignment:
| Q |
116 |
gtttatcgagtatggcagcacttgagtttttaatgtgacgggaaatattatcttgaaaagttaactgtagacgaaattaagttacttactgcatatggca |
215 |
Q |
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| T |
38672672 |
gtttatcgagtatgacgacacttaagtttttaatgttacaggaaagattatcttcaaaatttaattgtagacgaaat----gtacttactgcatataaca |
38672767 |
T |
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| Q |
216 |
gggaaaatatgtgct |
230 |
Q |
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| T |
38672768 |
gggaaaagatgtgct |
38672782 |
T |
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