View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_low_15 (Length: 240)
Name: NF10517_low_15
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 3035342 - 3035547
Alignment:
| Q |
17 |
atattaatggtgtcgacattagtaattccaatgtttatactgcaggagaaaggaaaatctgatgaagtacacgagctggctatgataatcagttgggtta |
116 |
Q |
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| T |
3035342 |
atattaatggtgtcgacattagtaattccaatgtttatactgcaggagaaaggaaaatctgatgacgtacacgagctggctatgataatcagttggatta |
3035441 |
T |
|
| Q |
117 |
cgacaatttacatcaatgaagcttataaagcaaggaagaaaccattgatttaaactgaagtagattaggtttgacagcttctagtaactaccaccctcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035442 |
cgacaatttacatcaatgaagcttataaagcaaggaagaaaccattgatttaaactgaagtagattaggtttgacagcttctagtaactaccaccctcat |
3035541 |
T |
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| Q |
217 |
tctttc |
222 |
Q |
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|||||| |
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| T |
3035542 |
tctttc |
3035547 |
T |
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