View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10517_low_16 (Length: 239)

Name: NF10517_low_16
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10517_low_16
NF10517_low_16
[»] chr8 (2 HSPs)
chr8 (88-223)||(25117212-25117347)
chr8 (1-38)||(25117074-25117111)
[»] chr7 (1 HSPs)
chr7 (151-183)||(35713641-35713673)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 25117212 - 25117347
Alignment:
Q  88 cacttatcatgcctctctattgtgaaatgttggctctaggccatacaaaatacannnnnnn-gcatgataggattagaaatgaaaatattaaagagaaga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||||| ||||    
T  25117212 cacttatcatgcctctctattgtgaaatgttggctctaggccatacaaaatacattttttttgcatgatatgattagaaatgaaaatattaaaga-aaga 25117310  T
Q  187 taaagagagattcggggtagaacctatcacggaaaag 223  Q
    |||||||||||||||||||||||||||||||||||||    
T  25117311 taaagagagattcggggtagaacctatcacggaaaag 25117347  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25117074 - 25117111
Alignment:
Q  1 aaatatacttcaaattgctatctcatatattgttcacc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25117074 aaatatacttcaaattgctatctcatatattgttcacc 25117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 35713641 - 35713673
Alignment:
Q  151 atgataggattagaaatgaaaatattaaagaga 183  Q
    ||||||||||||||||||||||||||| |||||    
T  35713641 atgataggattagaaatgaaaatattagagaga 35713673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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