View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_low_5 (Length: 332)
Name: NF10517_low_5
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 34094983 - 34095103
Alignment:
| Q |
20 |
gggttcccaaaacaataagaccccccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
119 |
Q |
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| T |
34094983 |
gggtccccaaaacaataagaccctccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
34095082 |
T |
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| Q |
120 |
cataaaataaaaccctcacac |
140 |
Q |
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||||||||||||||||||||| |
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| T |
34095083 |
cataaaataaaaccctcacac |
34095103 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 34095243 - 34095275
Alignment:
| Q |
281 |
ccactaagaggtgtaggagttgaacagttagag |
313 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34095243 |
ccactaagaggtgtaggagttgaacagttagag |
34095275 |
T |
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