View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_low_6 (Length: 304)
Name: NF10517_low_6
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 39557522 - 39557810
Alignment:
| Q |
1 |
atataatgttcagtccttagnnnnnnnngcatgcaaatttctcactgttatagtgaaaatgacatgttttctagtagttatcatgccaaatccaaatcat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557522 |
atataatgttcagtccttagttttttttgcatgcaaatttctcactgttatagtgaaaatgacatgttttctagtagttatcatgccaaatccaaatcat |
39557621 |
T |
|
| Q |
101 |
caatatcaaaactaagaatat--atatatgtacgttaaattaatgttttgatcctcttgccatcaccgcctacccttcttcctatagtatgaaatatttt |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39557622 |
caatatcaaaactaagaatatatatatatgtacgttaaattaatgttttgatcctcttgccatcaccgcctacccttcttcctataatatgaaatatttt |
39557721 |
T |
|
| Q |
199 |
tgttgacatttccatttttctttccatcttctaaagagtaacaacttctttagactgatgggtttgttcaaaagtaaacgtgtggttta |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557722 |
tgttgacatttccatttttctttccatcttctaaagagtaacaacttctttagactgatgggtttgttcaaaagtaaacgtgtggttta |
39557810 |
T |
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