View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10517_low_8 (Length: 254)

Name: NF10517_low_8
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10517_low_8
NF10517_low_8
[»] chr4 (39 HSPs)
chr4 (1-239)||(9592089-9592327)
chr4 (7-64)||(6289316-6289373)
chr4 (7-64)||(9119524-9119581)
chr4 (7-64)||(18962005-18962062)
chr4 (7-64)||(19725755-19725812)
chr4 (1-64)||(50073429-50073492)
chr4 (7-64)||(2016378-2016435)
chr4 (1-64)||(22589325-22589388)
chr4 (7-60)||(1186826-1186879)
chr4 (11-64)||(19956819-19956872)
chr4 (7-64)||(23777197-23777254)
chr4 (7-60)||(35022924-35022977)
chr4 (7-64)||(45904077-45904134)
chr4 (7-64)||(51240106-51240163)
chr4 (7-65)||(26858467-26858525)
chr4 (7-60)||(7472277-7472330)
chr4 (7-64)||(9695228-9695285)
chr4 (11-60)||(10726031-10726080)
chr4 (11-60)||(10939800-10939849)
chr4 (7-64)||(36413802-36413859)
chr4 (7-64)||(40919363-40919420)
chr4 (7-64)||(41970088-41970145)
chr4 (2-64)||(40489374-40489436)
chr4 (7-64)||(13209593-13209650)
chr4 (7-56)||(44120928-44120977)
chr4 (150-198)||(37479143-37479191)
chr4 (14-61)||(10308501-10308548)
chr4 (23-64)||(19693154-19693195)
chr4 (23-64)||(19703739-19703780)
chr4 (7-64)||(34625103-34625159)
chr4 (25-56)||(24886700-24886731)
chr4 (23-64)||(3066660-3066701)
chr4 (7-40)||(18961964-18961997)
chr4 (7-40)||(40489333-40489366)
chr4 (23-64)||(41787188-41787229)
chr4 (23-64)||(41788198-41788239)
chr4 (7-40)||(44120879-44120912)
chr4 (7-40)||(50073388-50073421)
chr4 (8-40)||(36413867-36413899)
[»] chr3 (18 HSPs)
chr3 (7-65)||(42996533-42996591)
chr3 (1-63)||(45125211-45125273)
chr3 (7-64)||(53764697-53764754)
chr3 (7-64)||(54716640-54716697)
chr3 (7-64)||(43001716-43001773)
chr3 (7-64)||(51494638-51494695)
chr3 (2-62)||(50724883-50724943)
chr3 (2-62)||(50787907-50787967)
chr3 (1-64)||(7569295-7569358)
chr3 (7-64)||(9169093-9169150)
chr3 (7-64)||(14770551-14770608)
chr3 (7-64)||(51187790-51187847)
chr3 (7-64)||(53568417-53568474)
chr3 (140-198)||(41016991-41017048)
chr3 (30-64)||(6588059-6588093)
chr3 (23-64)||(11962004-11962045)
chr3 (23-64)||(11962858-11962899)
chr3 (23-64)||(54717981-54718022)
[»] scaffold0021 (1 HSPs)
scaffold0021 (7-64)||(157396-157453)
[»] chr7 (28 HSPs)
chr7 (7-64)||(20588288-20588345)
chr7 (7-64)||(38974574-38974631)
chr7 (1-64)||(41446137-41446200)
chr7 (7-64)||(36801693-36801750)
chr7 (15-64)||(44434349-44434398)
chr7 (1-58)||(17802050-17802107)
chr7 (7-64)||(18201517-18201574)
chr7 (7-56)||(21948962-21949011)
chr7 (7-64)||(40139691-40139748)
chr7 (7-64)||(48926033-48926090)
chr7 (2-62)||(10555709-10555769)
chr7 (15-64)||(44434431-44434479)
chr7 (7-64)||(47350921-47350978)
chr7 (1-64)||(29673584-29673647)
chr7 (1-60)||(40348270-40348329)
chr7 (14-60)||(22165092-22165138)
chr7 (14-60)||(22223799-22223845)
chr7 (150-198)||(23964870-23964918)
chr7 (7-64)||(17168013-17168067)
chr7 (1-40)||(41930809-41930848)
chr7 (91-137)||(45560653-45560699)
chr7 (7-64)||(10573437-10573494)
chr7 (7-40)||(21202760-21202793)
chr7 (23-64)||(30085760-30085801)
chr7 (7-40)||(36801758-36801791)
chr7 (7-40)||(38974533-38974566)
chr7 (7-40)||(47350986-47351019)
chr7 (23-63)||(10715977-10716017)
[»] chr2 (35 HSPs)
chr2 (7-64)||(12542262-12542319)
chr2 (2-62)||(36286241-36286301)
chr2 (7-62)||(10741214-10741269)
chr2 (2-64)||(34922341-34922403)
chr2 (7-64)||(31025998-31026055)
chr2 (7-60)||(34470152-34470205)
chr2 (7-64)||(3368836-3368893)
chr2 (7-64)||(10788521-10788578)
chr2 (7-64)||(10857498-10857555)
chr2 (7-64)||(19885980-19886037)
chr2 (7-64)||(28451839-28451896)
chr2 (7-64)||(30504399-30504456)
chr2 (7-64)||(37343775-37343832)
chr2 (7-64)||(37551876-37551933)
chr2 (8-64)||(32661528-32661584)
chr2 (8-64)||(38396635-38396691)
chr2 (7-65)||(35180418-35180476)
chr2 (7-64)||(44245103-44245160)
chr2 (7-54)||(28217016-28217063)
chr2 (2-64)||(39374264-39374325)
chr2 (7-64)||(35172946-35173003)
chr2 (7-60)||(40938913-40938966)
chr2 (150-198)||(15807361-15807409)
chr2 (150-198)||(39281641-39281689)
chr2 (23-64)||(7537552-7537593)
chr2 (7-64)||(42274657-42274714)
chr2 (1-40)||(37551829-37551868)
chr2 (1-40)||(40938978-40939017)
chr2 (1-60)||(41454627-41454686)
chr2 (23-64)||(7538402-7538443)
chr2 (3-40)||(20480260-20480297)
chr2 (7-40)||(32661592-32661625)
chr2 (7-40)||(37343840-37343873)
chr2 (23-63)||(17102443-17102483)
chr2 (8-40)||(44245063-44245095)
[»] chr1 (36 HSPs)
chr1 (7-64)||(22182549-22182606)
chr1 (1-64)||(16149879-16149942)
chr1 (1-64)||(26064038-26064101)
chr1 (1-64)||(37696365-37696428)
chr1 (3-62)||(48826236-48826295)
chr1 (7-65)||(36196980-36197038)
chr1 (7-64)||(16318790-16318847)
chr1 (1-64)||(15911789-15911852)
chr1 (1-64)||(51195813-51195876)
chr1 (1-64)||(52201528-52201591)
chr1 (7-61)||(28731471-28731525)
chr1 (7-64)||(19968417-19968474)
chr1 (7-64)||(24183177-24183234)
chr1 (7-64)||(26932706-26932763)
chr1 (7-64)||(35544866-35544923)
chr1 (20-64)||(29153358-29153402)
chr1 (7-64)||(1712493-1712550)
chr1 (7-64)||(7159669-7159726)
chr1 (7-64)||(21931921-21931978)
chr1 (7-64)||(52254654-52254711)
chr1 (7-59)||(41003697-41003749)
chr1 (1-64)||(13344309-13344372)
chr1 (7-64)||(19893038-19893095)
chr1 (150-197)||(23171931-23171978)
chr1 (7-48)||(6912329-6912370)
chr1 (23-64)||(13099174-13099215)
chr1 (23-64)||(20595996-20596037)
chr1 (1-40)||(52201481-52201520)
chr1 (23-65)||(37554361-37554403)
chr1 (140-198)||(47265480-47265537)
chr1 (23-60)||(13110576-13110613)
chr1 (7-40)||(16318855-16318888)
chr1 (7-40)||(22182508-22182541)
chr1 (23-64)||(25820249-25820289)
chr1 (23-64)||(25820686-25820727)
chr1 (7-40)||(29153317-29153350)
[»] chr8 (25 HSPs)
chr8 (1-64)||(5548024-5548087)
chr8 (1-64)||(8038147-8038210)
chr8 (1-65)||(27300650-27300714)
chr8 (7-62)||(36624027-36624082)
chr8 (7-64)||(17074897-17074954)
chr8 (7-64)||(17573316-17573373)
chr8 (7-60)||(23623544-23623597)
chr8 (7-60)||(34608470-34608523)
chr8 (7-64)||(13229484-13229541)
chr8 (7-64)||(15589758-15589815)
chr8 (7-64)||(32498500-32498557)
chr8 (20-64)||(40021653-40021697)
chr8 (2-55)||(32165008-32165061)
chr8 (7-64)||(41368474-41368531)
chr8 (23-64)||(35409852-35409893)
chr8 (27-64)||(44807216-44807253)
chr8 (25-64)||(31191603-31191642)
chr8 (23-66)||(43658312-43658355)
chr8 (94-140)||(27926319-27926365)
chr8 (26-60)||(29919214-29919248)
chr8 (23-64)||(3340205-3340246)
chr8 (23-64)||(3345507-3345548)
chr8 (7-64)||(7477460-7477516)
chr8 (7-40)||(34608538-34608571)
chr8 (3-36)||(36624073-36624106)
[»] scaffold0039 (1 HSPs)
scaffold0039 (7-64)||(55287-55344)
[»] chr6 (23 HSPs)
chr6 (7-64)||(378373-378430)
chr6 (7-64)||(929340-929397)
chr6 (7-64)||(11108868-11108925)
chr6 (7-64)||(24897214-24897271)
chr6 (7-64)||(33274355-33274412)
chr6 (1-64)||(12730470-12730533)
chr6 (1-64)||(31175699-31175762)
chr6 (7-64)||(8160721-8160778)
chr6 (3-60)||(9952004-9952061)
chr6 (7-60)||(19621330-19621383)
chr6 (7-64)||(24119615-24119672)
chr6 (7-64)||(33265209-33265266)
chr6 (23-64)||(21004257-21004298)
chr6 (25-60)||(33129567-33129602)
chr6 (2-40)||(19621395-19621433)
chr6 (140-198)||(29113420-29113477)
chr6 (7-40)||(12730429-12730462)
chr6 (23-64)||(21003507-21003548)
chr6 (7-40)||(24119680-24119713)
chr6 (23-64)||(28932088-28932129)
chr6 (7-40)||(31175658-31175691)
chr6 (7-40)||(32591763-32591796)
chr6 (7-39)||(32591719-32591751)
[»] chr5 (13 HSPs)
chr5 (7-64)||(12881791-12881848)
chr5 (1-64)||(8714085-8714148)
chr5 (7-60)||(10332079-10332132)
chr5 (7-64)||(12610407-12610464)
chr5 (7-56)||(4146230-4146279)
chr5 (7-64)||(8006105-8006162)
chr5 (7-64)||(39573658-39573716)
chr5 (7-64)||(15204164-15204221)
chr5 (7-54)||(16039592-16039639)
chr5 (7-40)||(4146295-4146328)
chr5 (7-40)||(8006170-8006203)
chr5 (7-40)||(12610366-12610399)
chr5 (7-48)||(16822907-16822948)
[»] scaffold0236 (1 HSPs)
scaffold0236 (7-60)||(22940-22993)
[»] scaffold0121 (1 HSPs)
scaffold0121 (7-64)||(32645-32702)
[»] scaffold0028 (1 HSPs)
scaffold0028 (7-62)||(32102-32157)
[»] scaffold2010 (1 HSPs)
scaffold2010 (7-61)||(616-670)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-60)||(63202-63260)
[»] scaffold0279 (1 HSPs)
scaffold0279 (7-48)||(7065-7106)
[»] scaffold0250 (1 HSPs)
scaffold0250 (23-63)||(21977-22017)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9592327 - 9592089
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtttgccacatgttatatgcatctaggtacctaaatgg 100  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9592327 gaccacttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtttgccacatgttatatgcatccaggtgcctaaatgg 9592228  T
Q  101 actaaatggatagttccctaaatggagcatacctgaactcctgtttgtggggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtgta 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9592227 actaaatggatagctccctaaatggagcatacctgaactcctgtttatggggagtcaaatgaagaagatttacaaagacactcaatgtagaaggtgtgta 9592128  T
Q  201 gtgatggatccaaaaattttaataagtagggttaaaatt 239  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  9592127 gtgatggatccaaaaattttaataagtggggtcaaaatt 9592089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 6289316 - 6289373
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6289316 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 6289373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9119524 - 9119581
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9119524 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 9119581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 18962062 - 18962005
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18962062 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 18962005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19725812 - 19725755
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19725812 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 19725755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50073492 - 50073429
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50073492 gaccacttttgacatagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 50073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 2016378 - 2016435
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2016378 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccatgtgt 2016435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22589388 - 22589325
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  22589388 gaccacttttgacatagtcttcgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 22589325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 1186879 - 1186826
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1186879 ttttgacttagtcttcgctgacgtgacacccacatcccttaagtgaggtgccac 1186826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 19956819 - 19956872
Alignment:
Q  11 gacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  19956819 gacttagtcttggctgacgtggcacccacatcccttaagtgaggtgccacgtgt 19956872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 23777254 - 23777197
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  23777254 ttttgacttagtcttcgttgacgtggcacccacatcccttaattgaggtgccacgtgt 23777197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 35022924 - 35022977
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  35022924 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtaaggtgccac 35022977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 45904134 - 45904077
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  45904134 ttttgacctagtcttcgctgacgtgccacccacatcccttaagtgaggtgccacgtgt 45904077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 51240106 - 51240163
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||    
T  51240106 ttttgacttaatcttcgctgacgtggcacccacatcccttaaatgaggtgccacgtgt 51240163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 26858467 - 26858525
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  26858467 ttttgacttagtcttcgctggcgtggcacctacatcccttaagtgaggtgccatgtgtt 26858525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 7472277 - 7472330
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  7472277 ttttgacttagtcttcgctgaggtggcacccatatcccttaagtgaggtgccac 7472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 9695285 - 9695228
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||    
T  9695285 ttttgacttagtcttcgctgacgtggcacgcacatcccttaagtgaagtgtcacgtgt 9695228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 10726031 - 10726080
Alignment:
Q  11 gacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10726031 gacttagtcttcgctgacttggcacccacatcccttaagtgaggtgccac 10726080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 10939800 - 10939849
Alignment:
Q  11 gacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10939800 gacttagtcttcgctgacttggcacccacatcccttaagtgaggtgccac 10939849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 36413802 - 36413859
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  36413802 ttttaacttagtctgcgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 36413859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 40919363 - 40919420
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||    
T  40919363 ttttgacttagtcttcgttgacgtgacacccaaatcccttaagtgaggtgccacgtgt 40919420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 41970088 - 41970145
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||    
T  41970088 ttttgacttagtcttcgctgacgtgacacccacatcccttaagtgatgcgccacgtgt 41970145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 40489436 - 40489374
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| |||||||||||| |||| ||||||| |||||| |||||||||||||||||| ||||||    
T  40489436 accacttttgacttagtcttcgttgacgtgacacccatatcccttaagtgaggtgctacgtgt 40489374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 13209650 - 13209593
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||| | ||||||||||||||||||||||| ||||| |||||||||| ||||    
T  13209650 ttttgacttaatcttcgctgacgtggcacccacatctcttaattgaggtgccaggtgt 13209593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 44120977 - 44120928
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtg 56  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  44120977 ttttgacttcgtcttcgctgacgtggctcccacatcccttaagtgaggtg 44120928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 37479191 - 37479143
Alignment:
Q  150 gggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  37479191 gggagtcaaatgaagaggacttacaatgacactcaatgtggaaggtgtg 37479143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 10308548 - 10308501
Alignment:
Q  14 ttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacg 61  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  10308548 ttagtcttcactgacgtggcacccatatcccttaagtgaggtgccacg 10308501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 19693154 - 19693195
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  19693154 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 19693195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 19703739 - 19703780
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  19703739 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 19703780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 34625159 - 34625103
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  34625159 ttttgacttagtcttcgccgacgtggcaaccacat-cctcaagtgaggtgccacgtgt 34625103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 24886731 - 24886700
Alignment:
Q  25 tgacgtggcacccacatcccttaagtgaggtg 56  Q
    ||||||||||||||||||||||||||||||||    
T  24886731 tgacgtggcacccacatcccttaagtgaggtg 24886700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 3066701 - 3066660
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  3066701 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 3066660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 18961964 - 18961997
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  18961964 ttttgacttagtcttcgctgacgtggcacccaca 18961997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 40489333 - 40489366
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  40489333 ttttgacttagtcttcgctgacgtggcacccaca 40489366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 41787188 - 41787229
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  41787188 gctgacgtggcacccacattccattagtgaggtgccacgtgt 41787229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 41788239 - 41788198
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  41788239 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 41788198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 44120879 - 44120912
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  44120879 ttttgacttagtcttcgctgacgtggcacccaca 44120912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 50073388 - 50073421
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  50073388 ttttgacttagtcttcgctgacgtggcacccaca 50073421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 36413899 - 36413867
Alignment:
Q  8 tttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||||||||| |||||||||||||||||||||    
T  36413899 tttgacttagtcttcgctgacgtggcacccaca 36413867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 42996533 - 42996591
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42996533 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 42996591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45125211 - 45125273
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtg 63  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45125211 gaccacttttgatttagttttcgctgacgtggcacccacatcccttaagtgaggtgccacgtg 45125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 53764697 - 53764754
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  53764697 ttttgacttagtcttcactgacgtggcacccacatcccttaagtgaggtgccacgtgt 53764754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 54716697 - 54716640
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  54716697 ttttgacttagtattcgctgacgtggcacccacatcccttaagtgaggtgctacgtgt 54716640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 43001716 - 43001773
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  43001716 ttttgacttagtcttcgctgacgtgacacccatatcccttaagtgaggtgccacgtgt 43001773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 51494638 - 51494695
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  51494638 ttttgacttagcattcgctgacgtggcacccacatcccttaagtgaggtgccatgtgt 51494695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 50724943 - 50724883
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  50724943 accacttttgacttagtcttcgctgacgtggcacccatatctcttaagtgaggtgccacgt 50724883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 50787907 - 50787967
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  50787907 accacttttgacttagtcttcgctgacgtggcacccatatctcttaagtgaggtgccacgt 50787967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7569358 - 7569295
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||    
T  7569358 gaccacttttgacttagtcttcgctgacgtggcacccatatcccttaagtgagatgtcacgtgt 7569295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9169093 - 9169150
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||    
T  9169093 ttttgacttagtcttcactgacgtggcaaccacatcccttaagtgaggtgccatgtgt 9169150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 14770608 - 14770551
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||    
T  14770608 ttttgacttggtcttcgctgacgtgccacccacatcacttaagtgaggtgccacgtgt 14770551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 51187790 - 51187847
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||||||| |||||||    
T  51187790 ttttgacttagtcttcgctgacgtgacacccatatcccttaaatgaggtgtcacgtgt 51187847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 53568417 - 53568474
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||  |||||||||||||    
T  53568417 ttttgatttagtcttcgctgacgtggcacccatatcccttaagcaaggtgccacgtgt 53568474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 41017048 - 41016991
Alignment:
Q  140 cctgtttgtggggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||| ||||| ||||||||||  ||||| ||||||||||||||||||||||    
T  41017048 cctgtttgtggg-agtcagatgaagaagacatacaatgacactcaatgtggaaggtgtg 41016991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 6588059 - 6588093
Alignment:
Q  30 tggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||||||||||||||||    
T  6588059 tggcacccacatcacttaagtgaggtgccacgtgt 6588093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 11962004 - 11962045
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||  | |||||||||||||||||    
T  11962004 gctgacgtggcacccacatcctattagtgaggtgccacgtgt 11962045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 11962899 - 11962858
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||| ||||| | |||||||||||||||||    
T  11962899 gctgacgtggcacccatatcccattagtgaggtgccacgtgt 11962858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 54718022 - 54717981
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  54718022 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 54717981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 157396 - 157453
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  157396 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 157453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 20588345 - 20588288
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20588345 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 20588288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 38974631 - 38974574
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38974631 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 38974574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41446200 - 41446137
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  41446200 gaccacttttgacttagtcttcgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 41446137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 36801693 - 36801750
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  36801693 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgatgtgccacgtgt 36801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 44434398 - 44434349
Alignment:
Q  15 tagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44434398 tagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 44434349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17802107 - 17802050
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgcc 58  Q
    ||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  17802107 gaccacttttgacttactctttgctgacgtggcacccacatcccttaagtgaggtgcc 17802050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 18201574 - 18201517
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||    
T  18201574 ttttgacttagtcttcgctgacgtggtacccatatcccttaagtgaggtgtcacgtgt 18201517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 21949011 - 21948962
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtg 56  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21949011 ttttgacttagtcttcgctgacgtggcactcacatcccttaagtgaggtg 21948962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 40139748 - 40139691
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  40139748 ttttgacatactcttcgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 40139691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 48926033 - 48926090
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||    
T  48926033 ttttgacttagtcttcgctgacatgacactcacatcccttaagtgaggtgccacgtgt 48926090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 10555709 - 10555769
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||| ||||||||| || || |||||||||||||||||||| |||||||||||||||||||    
T  10555709 accaattttgacttggtctttgctgacgtggcacccacatcacttaagtgaggtgccacgt 10555769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 44434479 - 44434431
Alignment:
Q  15 tagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  44434479 tagtcttcgctga-gtggcacccacatcccttaagtgaggtgccacgtgt 44434431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 47350921 - 47350978
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||    
T  47350921 ttttgacttagtcttcgctgacgtttcacccacatctcttaagtgatgtgccacgtgt 47350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29673647 - 29673584
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||| ||||||| |||||||||||||||||||||||  |||||| ||||| |||||||    
T  29673647 gaccacttttaacttagtcttcgctgacgtggcacccacatcatttaagtaaggtgtcacgtgt 29673584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40348270 - 40348329
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||| |||| ||||| | || |||||||||||||||| |||||||||||||||||||||    
T  40348270 gaccacttttaacttaatctttgctgacgtggcacccatatcccttaagtgaggtgccac 40348329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 22165138 - 22165092
Alignment:
Q  14 ttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||    
T  22165138 ttagtcttcgctgatgtggcacccatatcccttaagtgaggtgccac 22165092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 22223845 - 22223799
Alignment:
Q  14 ttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||    
T  22223845 ttagtcttcgctgatgtggcacccatatcccttaagtgaggtgccac 22223799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 23964870 - 23964918
Alignment:
Q  150 gggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    ||||||||||| |||| || |||||| ||||||||||||||||||||||    
T  23964870 gggagtcaaataaagaggacttacaatgacactcaatgtggaaggtgtg 23964918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 17168067 - 17168013
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||| ||||||   ||||||||||||||||||| ||||||||||||    
T  17168067 ttttgacttagttttcactgacg---cacccacatcccttaagtggggtgccacgtgt 17168013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41930848 - 41930809
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  41930848 gaccacttttgacttagtcttcgctgacgtggcacccaca 41930809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 45560653 - 45560699
Alignment:
Q  91 acctaaatggactaaatggatagttccctaaatggagcatacctgaa 137  Q
    ||||||||||||||||||||   || |||||||||||||||||||||    
T  45560653 acctaaatggactaaatggaacattgcctaaatggagcatacctgaa 45560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10573494 - 10573437
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||| || || |||||| |||||||||||||||| ||||| ||||||| |||||||    
T  10573494 ttttgatttggtcttcgctaacgtggcacccacatcacttaaatgaggtgtcacgtgt 10573437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 21202793 - 21202760
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  21202793 ttttgacttagtcttcgctgacgtggcacccaca 21202760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 30085760 - 30085801
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  30085760 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 30085801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 36801791 - 36801758
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  36801791 ttttgacttagtcttcgctgacgtggcacccaca 36801758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 38974533 - 38974566
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  38974533 ttttgacttagtcttcgctgacgtggcacccaca 38974566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 47351019 - 47350986
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  47351019 ttttgacttagtcttcgctgacgtggcacccaca 47350986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 10715977 - 10716017
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtg 63  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  10715977 gctgacgtggcactcacatcccattagtgaggtgccacgtg 10716017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 12542262 - 12542319
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12542262 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 12542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 36286241 - 36286301
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36286241 accacttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 36286301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 10741269 - 10741214
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10741269 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 10741214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 34922341 - 34922403
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  34922341 accacttttgacttagtctttgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 34922403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 31025998 - 31026055
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  31025998 ttttgacttagtcttcgctaacgtggcacccacatcccttaagtgaggtgccacgtgt 31026055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 34470152 - 34470205
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34470152 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccac 34470205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 3368893 - 3368836
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  3368893 ttttgacttagtctttgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 3368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 10788521 - 10788578
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||    
T  10788521 ttttgacttagtcttcattgacgtggcacccacatcccttaagtgaggtgccacgtgt 10788578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10857555 - 10857498
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  10857555 ttttgacttagtcttcactgacgtggcacccacatcccttaactgaggtgccacgtgt 10857498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 19885980 - 19886037
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  19885980 ttttgacttagtcttcgctgacgtggcacccacaccccataagtgaggtgccacgtgt 19886037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 28451896 - 28451839
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  28451896 ttttgacttagtcttcgctgacgtggcacccatatcccttaagtgaggtgccatgtgt 28451839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 30504456 - 30504399
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  30504456 ttttgacttagtcttcgctgacgtggcacccacattctttaagtgaggtgccacgtgt 30504399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 37343775 - 37343832
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  37343775 ttttgacttagtcttcgctgacgtgacatccacatcccttaagtgaggtgccacgtgt 37343832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 37551933 - 37551876
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  37551933 ttttgacttagtcttcgctgacgtgacactcacatcccttaagtgaggtgccacgtgt 37551876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 32661528 - 32661584
Alignment:
Q  8 tttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  32661528 tttgacttagtcttagctgacgtggcatccacatcccttaagtgaggtgccacgtgt 32661584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 38396635 - 38396691
Alignment:
Q  8 tttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||    
T  38396635 tttgacttagtcttcgctgacgtggcacccacatcctttaagtgaggtgtcacgtgt 38396691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 35180476 - 35180418
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  35180476 ttttgacttagtcttcgctgacgtggcactcacatcacttaagtgaagtgccacgtgtt 35180418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 44245160 - 44245103
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||    
T  44245160 ttttgacttagtcttcgctgacgtggcacccacattccttaaatgagatgccacgtgt 44245103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 28217063 - 28217016
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgagg 54  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28217063 ttttgacttagtcttcgctgacgtggcacccatatcccttaagtgagg 28217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 39374325 - 39374264
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| |||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||    
T  39374325 accacttttgacttagtctt-gctgacgtggcacccacatcccttaattgaggtgtcacgtgt 39374264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 35173003 - 35172946
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||| || ||| ||||||||| |||||||||||    
T  35173003 ttttgacttagtcttcgctgacgtggcactcatatcacttaagtgaagtgccacgtgt 35172946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40938913 - 40938966
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||| | | |||||||| ||||||||||||||||||||||||||||||||    
T  40938913 ttttgactcaatcttcgctgatgtggcacccacatcccttaagtgaggtgccac 40938966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 15807409 - 15807361
Alignment:
Q  150 gggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  15807409 gggagtcaaatgaagaggacttacaatgacactcaatgtggaaggtgtg 15807361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 39281641 - 39281689
Alignment:
Q  150 gggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  39281641 gggagtcaaatgaagaggacttacaatgacactcaatgtggaaggtgtg 39281689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 7537552 - 7537593
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  7537552 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 7537593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 42274714 - 42274657
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || ||||||||| | ||||||||||| ||||||||||||| |||||||    
T  42274714 ttttgacttggtcttcgctgacttagcacccacatcacttaagtgaggtgtcacgtgt 42274657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37551829 - 37551868
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  37551829 gaccacttttgacttagtattcgctgacgtggcacccaca 37551868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40939017 - 40938978
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  40939017 gaccacttttgacttagtcttcgctgacgtggcacccaca 40938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41454627 - 41454686
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||| |||||||||||| |||||||||||||| ||||  | || |||||||||||||||    
T  41454627 gaccacttttgacttagtcttcgctgacgtggcgcccattttccataagtgaggtgccac 41454686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 7538443 - 7538402
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||  | |||||||||||||||||    
T  7538443 gctgacgtggcacccacatcctattagtgaggtgccacgtgt 7538402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 20480297 - 20480260
Alignment:
Q  3 ccatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  20480297 ccatttttgacttagtcttcgctgacgtgacacccaca 20480260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 32661625 - 32661592
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  32661625 ttttgacttagtcttcgctgacgtggcacccaca 32661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 37343873 - 37343840
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  37343873 ttttgacttagtcttcgctgacgtggcacccaca 37343840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 17102483 - 17102443
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtg 63  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  17102483 gctgacgtggcactcacatcccattagtgaggtgccacgtg 17102443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 44245063 - 44245095
Alignment:
Q  8 tttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||||||||| |||||||||||||||||||||    
T  44245063 tttgacttagtcttcgctgacgtggcacccaca 44245095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 22182606 - 22182549
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22182606 ttttgacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 22182549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16149942 - 16149879
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  16149942 gaccacttttgacttagtattcgctgacgtggcacccacatcccttaagtgaggtgtcacgtgt 16149879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26064038 - 26064101
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  26064038 gaccacttttgacttagtcttcgctgacgtggcacccacatcccttaagtcaggtgccacgtgt 26064101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37696365 - 37696428
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37696365 gaccacttttaacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 37696428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 48826295 - 48826236
Alignment:
Q  3 ccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  48826295 ccatttttgacttagttttcgctgacgtggcacccacattccttaagtgaggtgccacgt 48826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 36197038 - 36196980
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  36197038 ttttgacttagtcttcgctgacgtggcacgcacatcccttaagtgaggtgccacgtgtt 36196980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 16318790 - 16318847
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16318790 ttttaacttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 16318847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15911789 - 15911852
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  15911789 gaccacttttgacttagttttcgctaacgtggcacccacatcccttaagtgaggtgccatgtgt 15911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51195876 - 51195813
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  51195876 gaccacttttgacttagtcttcgctgacatggcacccatatcccttaagtgaggtgccacgtgt 51195813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 52201591 - 52201528
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  52201591 gaccacttttgacttagtcttcgctgacgtggcacccacatcccttaaaggaggtgccacgtgt 52201528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 28731471 - 28731525
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacg 61  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  28731471 ttttgacttagtcttcgctgacgtagcacccacatcccttaagtgaggtgccacg 28731525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19968474 - 19968417
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  19968474 ttttgacttagtttttgctgacgtggcactcacatcccttaagtgaggtgccacgtgt 19968417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24183177 - 24183234
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  24183177 ttttgacttggttttcgctgatgtggcacccacatcccttaagtgaggtgccacgtgt 24183234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 26932706 - 26932763
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  26932706 ttttgacttagtcttcgctgacgtggcacccacatatcttaagtgaggtgccacgtgt 26932763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 35544866 - 35544923
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  35544866 ttttgactcagtcttcgctgacgtgacacccacatcccttaagtgaggtgccacgtgt 35544923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 29153402 - 29153358
Alignment:
Q  20 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29153402 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 29153358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 1712493 - 1712550
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  1712493 ttttgacttagtattcgctgacgtgacacccaaatcccttaagtgaggtgctacgtgt 1712550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 7159726 - 7159669
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||    
T  7159726 ttttgacttggtcttcgctgacatggcacccacatcccttaattgaggtgccacgtgt 7159669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 21931978 - 21931921
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  21931978 ttttaacttagtcttcgttgacgtggcacccatatcccttaagtgaggtgccacgtgt 21931921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 52254711 - 52254654
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  52254711 ttttgacctagtcttcgctgacgtggcgcccatatcccttaagtgaggtgccacgtgt 52254654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 41003697 - 41003749
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgcca 59  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  41003697 ttttgacttagtcttcgctgacgtgacaaccacatcccttaagtgaggtgcca 41003749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13344372 - 13344309
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||| ||||||| || |||||| || ||||||||||||||||||||||||||||||||    
T  13344372 gaccacttttaacttagtctttgctgacatgacacccacatcccttaagtgaggtgccacgtgt 13344309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19893095 - 19893038
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| | |||||||||| |||| |||||||||||||||||||||| ||||    
T  19893095 ttttgacttagtctacgctgacgtgacacctacatcccttaagtgaggtgccatgtgt 19893038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 23171931 - 23171978
Alignment:
Q  150 gggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgt 197  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  23171931 gggagtcaaatgaagaagacttacaatgacactcaatgtgaaaggtgt 23171978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 6912370 - 6912329
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaa 48  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  6912370 ttttgacttagtcttcgctgatgtggcacccacatcccttaa 6912329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 13099215 - 13099174
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  13099215 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 13099174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 20596037 - 20595996
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  20596037 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 20595996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52201481 - 52201520
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  52201481 gaccacttttgacttagtcttcgctgacgtggcacccaca 52201520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 37554403 - 37554361
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||    
T  37554403 gctgacgtgacacccacatcacttaagtgaggtgccacatgtt 37554361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 47265537 - 47265480
Alignment:
Q  140 cctgtttgtggggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||| ||||| ||||||||||  ||||| |||||||||||||| |||||||    
T  47265537 cctgtttgtggg-agtcagatgaagaagacatacaatgacactcaatgtgggaggtgtg 47265480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 13110576 - 13110613
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||||||||||||| | |||||||||||||    
T  13110576 gctgacgtggcacccacatcccattagtgaggtgccac 13110613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 16318888 - 16318855
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  16318888 ttttgacttagtcttcgctgacgtggcacccaca 16318855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 22182508 - 22182541
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  22182508 ttttgacttagtcttcgctgacgtggcacccaca 22182541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 25820249 - 25820289
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  25820249 gctgacgtggcacccacatccatt-agtgaggtgccacgtgt 25820289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 25820727 - 25820686
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  25820727 gctgacgtggcacccacatcccattagtgaagtgccacgtgt 25820686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 29153317 - 29153350
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  29153317 ttttgacttagtcttcgctgacgtggcacccaca 29153350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5548087 - 5548024
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5548087 gaccacttttgacttagtcttcgctgacatggcacccacatcccttaagtgaggtgccacgtgt 5548024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8038147 - 8038210
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  8038147 gaccacttttgacttagtcttcgctgatgtggcacccacatcccttaagtgaggtgccacgtgt 8038210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27300714 - 27300650
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgtt 65  Q
    ||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  27300714 gaccacttttgacttagtcttcgctgacgtgacactcacatcccttaagtgaggtgccacgtgtt 27300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 36624027 - 36624082
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  36624027 ttttgacttagtcttcgttgacgtggcacccacatcccttaagtgaggtgccacgt 36624082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 17074954 - 17074897
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  17074954 ttttgacttggtcttcgctgacgtggcacccacatcccttaagtgaggtgtcacgtgt 17074897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 17573316 - 17573373
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  17573316 ttttgacttggtcttcgctgacgtggcacccacatcccttaagtgaggtgtcacgtgt 17573373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 23623544 - 23623597
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  23623544 ttttgacttagtcttcgctgacgtggtacccacatcccttaagtgaggtgccac 23623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 34608470 - 34608523
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  34608470 ttttgacttagtcttcgctgacgtggcacccacatctcttaagtgaggtgccac 34608523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 13229541 - 13229484
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||    
T  13229541 ttttgacttagtcttcgctgacgtggcacccacatcttttaagtgaggtaccacgtgt 13229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 15589758 - 15589815
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  15589758 ttttaacttagtctttgctgacgtggcacccacatcccttacgtgaggtgccacgtgt 15589815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 32498500 - 32498557
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  32498500 ttttaacttagtcttcgctaacgtggcacccatatcccttaagtgaggtgccacgtgt 32498557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 40021697 - 40021653
Alignment:
Q  20 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  40021697 ttcgctgacgtggcacccacatcccttaaatgaggtgccacgtgt 40021653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 32165061 - 32165008
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggt 55  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||| |||||    
T  32165061 accacttttgacttaatcttcgctgacgtggcacccacatcccttaagcgaggt 32165008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 41368474 - 41368531
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||| |||||||| ||| |||||||||||||||||||| |||||||||||    
T  41368474 ttttggcttagtcttcgctgatgtgacacccacatcccttaagtgacgtgccacgtgt 41368531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 35409852 - 35409893
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  35409852 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 35409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 44807253 - 44807216
Alignment:
Q  27 acgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  44807253 acgtggcactcacatcccttaagtgaggtgccacgtgt 44807216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 31191642 - 31191603
Alignment:
Q  25 tgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  31191642 tgacgtggcacccacatcccattagtgaggtgccacgtgt 31191603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 43658355 - 43658312
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgttt 66  Q
    ||||||||||||| |||||||| | |||||||||||||||||||    
T  43658355 gctgacgtggcactcacatcccattagtgaggtgccacgtgttt 43658312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 27926319 - 27926365
Alignment:
Q  94 taaatggactaaatggatagttccctaaatggagcatacctgaactc 140  Q
    |||||||||||||||||   || ||||||||||||||||||||||||    
T  27926319 taaatggactaaatggagccttgcctaaatggagcatacctgaactc 27926365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 29919214 - 29919248
Alignment:
Q  26 gacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||||||||||||||| |||||||||||||||||    
T  29919214 gacgtggcacccacatcacttaagtgaggtgccac 29919248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 3340205 - 3340246
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  3340205 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 3340246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 3345548 - 3345507
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  3345548 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 3345507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 7477460 - 7477516
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||| ||||| ||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  7477460 ttttgatttagtcttcgctgacatggcacc-acattccttaagtgagatgccacgtgt 7477516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 34608571 - 34608538
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  34608571 ttttgacttagtcttcgctgacgtggcacccaca 34608538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 36624106 - 36624073
Alignment:
Q  3 ccatttttgacttagtgttcgctgacgtggcacc 36  Q
    |||||||||||||||| |||||||||||||||||    
T  36624106 ccatttttgacttagtcttcgctgacgtggcacc 36624073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 55344 - 55287
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55344 ttttgagttagtcttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 55287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 378430 - 378373
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  378430 ttttgacttagtcttcgctgacgtgacacccacatcccttaagtgaggtgccacgtgt 378373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 929397 - 929340
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  929397 ttttgacttagtcttcgctgacgtggcacacacatcccttaagtgaggtgccacgtgt 929340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 11108925 - 11108868
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  11108925 ttttgacttagtcttcgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 11108868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24897214 - 24897271
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  24897214 ttttgacttagtcttcgctgatgtggcacccacatcccttaagtgaggtgccacgtgt 24897271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 33274355 - 33274412
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  33274355 ttttgacttagtcttcgctgacgtggcacccacatctcttaagtgaggtgccacgtgt 33274412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12730533 - 12730470
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  12730533 gaccacttttgacttagtcttcgctgacgtggcacccacatcccgtaagtgaggtgtcacgtgt 12730470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31175762 - 31175699
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||    
T  31175762 gaccacttttgacttagtcttcgttgacgtggcacccacattacttaagtgaggtgccacgtgt 31175699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 8160721 - 8160778
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  8160721 ttttgacttagtcttcgctgacgtggcacgcacattccttatgtgaggtgccacgtgt 8160778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 9952004 - 9952061
Alignment:
Q  3 ccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  9952004 ccatttttgacttagtctttgctgatgtggcacccacatcccttaagtgagatgccac 9952061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 19621330 - 19621383
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  19621330 ttttgacttagacttcgctgacgtggcacccacatcccttaagtgaggtaccac 19621383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24119615 - 24119672
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||| || || |||||||||||||||||||||||||||||    
T  24119615 ttttgacttagtcttcgctgacatgacatccacatcccttaagtgaggtgccacgtgt 24119672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 33265209 - 33265266
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| || |||||||||||||||||||| ||||||||| ||| |||||||    
T  33265209 ttttgacttagtctttgctgacgtggcacccacatctcttaagtgaagtgtcacgtgt 33265266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 21004298 - 21004257
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  21004298 gctgacgtggcacccacatcccattagtgaggtgccacgtgt 21004257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 33129602 - 33129567
Alignment:
Q  25 tgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||||||||| |||||||||||||||||    
T  33129602 tgacgtggcacccacatctcttaagtgaggtgccac 33129567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 19621433 - 19621395
Alignment:
Q  2 accatttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  19621433 accacttttgacttagtcttcgctgacgtggcacccaca 19621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 29113420 - 29113477
Alignment:
Q  140 cctgtttgtggggagtcaaatgaagaagatttacaaagacactcaatgtggaaggtgtg 198  Q
    |||||||||||| ||||| ||||||||||  ||||| |||||||||||||| |||||||    
T  29113420 cctgtttgtggg-agtcagatgaagaagacatacaatgacactcaatgtgggaggtgtg 29113477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 12730429 - 12730462
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  12730429 ttttgacttagtcttcgctgacgtggcacccaca 12730462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 21003507 - 21003548
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| |||||||||||| | |||||||||||||||||    
T  21003507 gctgacgtgacacccacatcccattagtgaggtgccacgtgt 21003548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 24119713 - 24119680
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  24119713 ttttgacttagtcttcgctgacgtggcacccaca 24119680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 28932088 - 28932129
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  28932088 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 28932129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 31175658 - 31175691
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  31175658 ttttgacttagtcttcgctgacgtggcacccaca 31175691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 32591796 - 32591763
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  32591796 ttttgacttagtcttcgctgacgtggcacccaca 32591763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 32591719 - 32591751
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccac 39  Q
    |||||||||||| ||||||||||||||||||||    
T  32591719 ttttgacttagtcttcgctgacgtggcacccac 32591751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 12881791 - 12881848
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  12881791 ttttgacttagttttcgctgacgtggcacccacatcccttaagtgaggtgccatgtgt 12881848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8714148 - 8714085
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||| |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  8714148 gaccacttttgacttagtctttgctgacgtggcacccatatcccttaagtgaggtgccacgtgt 8714085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 10332079 - 10332132
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  10332079 ttttgacttagtcttcgctgacgtggcacccacatcacttaagtgaggtgccac 10332132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 12610464 - 12610407
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  12610464 ttttgacttagtcttcggtgacgtggcacccatatcccttaagtgaggtgccacgtgt 12610407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 4146230 - 4146279
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtg 56  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  4146230 ttttgacttagtcttcgctgacgtggcacacacatcccttaagtgaggtg 4146279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 8006105 - 8006162
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||    
T  8006105 ttttgagttagtcttcgctgacgtggcacccacatcccttaagtgagatgccgcgtgt 8006162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 39573716 - 39573658
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggc-acccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||    
T  39573716 ttttgacttaatcttcgctgacgtgaccacccacatcccttaagtgaggtgccacgtgt 39573658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 15204221 - 15204164
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    |||||||||||| ||||||||| || |||| | ||||||||||| |||||||||||||    
T  15204221 ttttgacttagtcttcgctgacatgacacctatatcccttaagtaaggtgccacgtgt 15204164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 16039592 - 16039639
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgagg 54  Q
    |||||||||| | |||||||||||||||| ||||||||||||| ||||    
T  16039592 ttttgacttaatcttcgctgacgtggcactcacatcccttaagcgagg 16039639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 4146328 - 4146295
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  4146328 ttttgacttagtcttcgctgacgtggcacccaca 4146295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8006203 - 8006170
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  8006203 ttttgacttagtattcgctgacgtggcacccaca 8006170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 12610366 - 12610399
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccaca 40  Q
    |||||||||||| |||||||||||||||||||||    
T  12610366 ttttgacttagtcttcgctgacgtggcacccaca 12610399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 16822907 - 16822948
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaa 48  Q
    ||||||||||||  ||||||| ||||||||||||||||||||    
T  16822907 ttttgacttagtcctcgctgatgtggcacccacatcccttaa 16822948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 22940 - 22993
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22940 ttttgacttagtcttcgctgacgtggcacccacatccctttagtgaggtgccac 22993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 32645 - 32702
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 64  Q
    ||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||    
T  32645 ttttgacttggtcttcgctgacgtgacacccacatcacttaagtgaggtgccacgtgt 32702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 32102 - 32157
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacgt 62  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||    
T  32102 ttttgacttggtcttcgttgacgtgacacccacatcccttaagtgaggtgccacgt 32157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 616 - 670
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccacg 61  Q
    |||||||||||| ||| |||||||||||| || ||||||||||||||||||||||    
T  616 ttttgacttagtcttccctgacgtggcactcatatcccttaagtgaggtgccacg 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 63260 - 63202
Alignment:
Q  1 gaccatttttgacttagtgttcgctgacgtggcacccacatcccttaagtgaggtgccac 60  Q
    ||||| ||||||||| || |||| ||||||||||||||||| | ||||||||||||||||    
T  63260 gaccaattttgacttggtcttcgttgacgtggcacccacat-cattaagtgaggtgccac 63202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7106 - 7065
Alignment:
Q  7 ttttgacttagtgttcgctgacgtggcacccacatcccttaa 48  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  7106 ttttgacctagtattcgttgacgtggcacccacatcccttaa 7065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 21977 - 22017
Alignment:
Q  23 gctgacgtggcacccacatcccttaagtgaggtgccacgtg 63  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  21977 gctgacgtggcactcacatcccattagtgaggtgccacgtg 22017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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