View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10517_low_9 (Length: 251)
Name: NF10517_low_9
Description: NF10517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10517_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 52686590 - 52686489
Alignment:
| Q |
13 |
aattgctaccaaactattttgattatatgagtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaata |
112 |
Q |
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| T |
52686590 |
aattgctaccaaactattttgattatatgagtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaata |
52686491 |
T |
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| Q |
113 |
tc |
114 |
Q |
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| T |
52686490 |
tc |
52686489 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 52686460 - 52686363
Alignment:
| Q |
143 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaagaagattagcactcactttcatacacgtacaagtgtacaacaacatcactaacctatg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52686460 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaaga-gattaacactcactttcatacacgtacaagtgtacaacaacaccactaacctatg |
52686363 |
T |
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